DreINT0139541 @ danRer10
Intron Retention
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14753076-14753625:-
Coord C1 exon
chr17:14753419-14753625
Coord A exon
chr17:14753224-14753418
Coord C2 exon
chr17:14753076-14753223
Length
195 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TCTTTCTTATGGTGACGAAGAAG
3' ss Score
-0.68
Exon sequences
Seq C1 exon
ATTCAGCATGAAGTGACTCATTTGGGTGCCGTGCACAAGCTGTGCAGCGATGAATGCTTTGCACGCTTCAGATCCTCCCGAAACCTCTACATGAGCTACTGTGAAAACTGTGGCAACTGTAAAGCCTCAGGAAACTATCACCTGGTTCAGATAGACGATAGTATTAAGAAGTTTTGCTGCGTCGAATGCATCGCCAATTATAAACAG
Seq A exon
GTACTTCATTATTGCACAAAAGAACTGTAGTTATGGGATAATGGGATGTGCGGGTTAAATTTTTTTTCCTGATCATATTTTCTAATTTATTGTAAAAGGAATAAAAGTAAAAAAACAATGAACAGGACATAAATGTGACTTTAGAAACCAAATCACTGTGGAGTTAAATCTGTTGTCTTTCTTATGGTGACGAAG
Seq C2 exon
AAGAGTGGCAAGCGGCTTCACTGTCCATACTGCCAAGATATCAGAAACATTGATCAGATGATGGAGGGCACGAACATACAGGGCGTCACTGAGTTCTTCTGCTCTCAGAGATGTGTGGCTTTGAGTCAAGCATCTCCCAGTTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681:ENSDART00000154690:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(64.7=31.9),PF064679=zf-FCS=WD(100=60.9)
A:
NA
C2:
PF064679=zf-FCS=PU(7.3=6.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCACGCTTCAGATCCTCC
R:
GAAGAACTCAGTGACGCCCTG
Band lengths:
249-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]