MmuINT0180536 @ mm10
Intron Retention
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126907086-126911002:-
Coord C1 exon
chr4:126910790-126911002
Coord A exon
chr4:126907237-126910789
Coord C2 exon
chr4:126907086-126907236
Length
3553 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TTGTTTTATTCTGTTAATAGAAA
3' ss Score
6.55
Exon sequences
Seq C1 exon
ATTCGACATGAAGTTAATTACCAGAACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTTTCGAAGTTTCGCTCTGCTAACAACCTCACTATGAACTGTTGTGAGAACTGTGGGGGTTACTGTTATAGTGGCTCTGGACAGTGCCATGTGCTGCAAATTGAGGGGCAGTCTAAGAAGTTTTGTAGTTCAATGTGTGTCACCTCATACAAGCAG
Seq A exon
GTATTTGATCTTTTAAATCTTGATTTATCTTCATTTCAGGGGAGTTGAAACCTTGGGTAGGATTATTTTTGAAGCAGTTTAAAATAATGAGATAAGTATTTGGTTAAGTTTTTGTATGCATTAGGCATTTGTCAAATGTTCTGAAATAGAGTTCTATATGTCCCAGTTTCTGTACATGCATTACGGAATGCATCTTTTAGCCGAATAGTGGTAGTGCACACTGTTATCCCAGCACACAGGAGACAAAGGGAGGCAGATCTCTGCAAGTTTGTTTGAGGCAGCCATAGTTACACAGGGAAACCCTGTCCCCCAAAACTAGTAAGAAATGCATCTTTTAGGCTGGGTGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGCGGATTTCTGAGTTCATTTCTGAGGTCGAGGCCAGCCTGGTCTACAAAGTGAAACCCTGTCTCGAAAAACCAAAAAAAAAGAATGCATCTTTTTAGGATTTGGCTTTGTTTTGTTGAGACAGGGTCTCACTATGGAGTCATGTCTTCCTGGAATTTGTCATATGACCCAGGCTAATCTTGAACTGCCCTTTTGCCTTTGCTTACCACGGGCAGGAATCATCTGCATTTAATGTCATTCCTGGCTAGGGCGTGGCTTTTATTTCAGATGTGATTTGTGTTTTTGAATAGTAATTTTTAAGTGACCCAAACATACAGCAGAATTATATTTCCTAGGAATATCCATTCTTTTTAATGTGTAGCCTTCTGATCTTTCAAATATAGTTTGGTTTTTATATTTGTTCTTCAGCAAAAAGGTTCAGATTCATGTATGTCTGTGCGTGTGTGTGTGTGTGTATATACACACACACACATATACACACATACATACATATACATACATACACATGCTCACACATATATTTTCTTGCAAATGGAACCACATAATTATAGTTGTAGAAAATAAAAATCTTAGTAGAGTGAAGAGAATTTTCTTCCTTAACCAGAAGAAATGAGGGCTATTCATTACTTTGTAAATTAGAAATTTGCAGAGAATAAACTGGAGAAACTCTATGATAAGAATCTTCTATGCTATTTGGTTTTTTTGGTCCACATCTCACCAGTAAATTTTGGTTATATATTAGTTTCATAATTGGTTACCCTAAACAGTGGTTCTCAGCCTAAGGAGCATGACCCATTGGTAGGTGGAATAACTCTGTTACAGAGGTAGTTTAATACCATTGGAAAACAGATTTTACATTATGATCCTTAGCAGTAGTGAAATTACAGTTCTGAATAGGAATGAAAGCAATGTTGTCAGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGTATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAACAAACAAACAAACAAAGCAATGTTATGGTTGGGAGTCATCACAACATGAGCAACTGTATTAAAGGGTTGCAGCATTAGGAAGGTTAAGAACCACTGTCCTAGGGGATGGTAAATACTTTTTATATTTTACAGTGGCTTCCTATTTTATTTCATTTGCTGATCTGACTGTTTTCTTTTAATACATAGTGAATTTTGTATATAGGCCACTAAAACCAGTGAATAGTGCCAGTTAGGTTTTACTGTTATTGCATTCAATTATTTTGCTGTTGGGGAAGGGGTATTTTTGCTTTGTTTTGAGAGTTAGGCTCTCACCATGTAGCACTGGATGGCCTGGGACTCACTGTAGAAATTCAGCATTTTTAAAATTATTGGTGATTTCTAATTTTTGAAAGGGTTTAGCCTTAACGCATAATATATACTTGTTTTTTCTCACAAATGAAAAATAATTTAATATTTTTTAAAGGCTATTCTTTTCCTGATATTTTATCAGATACTAAAAGTTGAGGCTTCATAAAAAGAGAAATAGAATAAAACATAATTTTAAATTGGGTTTTTAATTTTAATTTTGAAAGTTTACTTTTCATGTATTAAAATATGCTGTGTTAAGGACATGTTTCTCAGGTCCCTACTCTCAGTCTTCCAGAAGTACAAGGACCTGGCATGGTGATGCACATCTTTATTTCTAAGAATTTGGGAATTAGAGGAAAGCAGGTCCCTGAGCTGGAGGCCAGTTTGGTTCAGTTTACATAGCTTGTGTCAAGCCATTTAGAACTACATAGTGAGACTCTGTCTTCAAAGCAAAAACCCAAACAATCCTTCTCCCAAGCAAAAAAAGACCAAACTATAGATTTTTAATGTAGTGAATGTTAAGACCAACCTAATATGTTCACGTACAGTTTTACATGGGGGAAAACACTACATATATTCTAGGTTTTTGTTTTTGTTTTTGTTTTTTTTTACCTATTAATGGTTGTGACAACTCGGCTGTGTAAACTAAGAGCAAAAGCACTAATACACAGCCTGGCACATTGTGGATGGTATTGCTTCTGCTTTCCTTTCTTTAATTTTAATTTATTCAAACAAACATTGAATCCAATTTCTGTTTTGTGGGAAGACATACTTCTGATATATAAATAAATGAAAAGATGGTATGATAGAAGTATTATGAGGTTCTATGTATCACAAACAAAGCATAGCCCGTAGGACTAGATAGATGTGTCAGCAAAAGGTTACAAAGATAAGTTTCGACTCAAGTCTTTTAAATTAAGTTTGGGTTTACAGTTCTGAACTAGGAGTTAGAAGATGTTCCAGGTCAGAACATCCTAATATACACAAATTTTAGTGTCACACTTACAACTTATCACAGAAAGGGAAGATTGTAAAATCTTTTACTTCTAGCTTGAGCAGTGTTTTCTTAAGTGTGTGACAGGGTAAGAGTCCTTGCCCTTATTTTCTGTTGAGTTCCTAGTTGAGTGACAGGTGCTCTGTTAGAATCACTGTTTTCTGCTCTCGCTTGATGCTTACAACACGCCTTGTTAAGGAGAGGATTAATACCGAGTTTCTAAATTTACTGATTTCCTTCAATTAGAACTTTGCTGCTTTAAATAGTATCTCTCATAGGAAGCTCTTTACACTTTTGGCTAATATATAAAAGAGAGACAGTTGTGTTATGTATAAAACAAGTTTTTAAAAACAACGTTTATCAGTTATTAGATCTTAAATTAACACTAGGTTATAGCTAACACTGTTTTCTAATGAGACACAGTAGAAATACGGAAGTATAACATACGGTTCCATGGTGAAAGGCTTTTCACTTTTGTATGCATACATATGCAATATGCATACTCAGAATTTCAGAATAACATACAAGTTTCCTTTGTGAAGGATCTTTCTGAGGACTGTACTGATGATCATTTGAAAACTACTGTTTTAAAATACTTCATGAGTAAGGGGAAGAAAATGTACCATGCAGGGCCCTGGGATTGACTCCTGCTACCACACATAAAAAGTAGTAATATTTCAACAGAGTTAAGTTAAACATTTCAAAGAATTATGCTTTATGAATTTGGTAAAAATGAATGTTGTTTTATTCTGTTAATAG
Seq C2 exon
AAATCAGCCAAAATAACACCATGTGCGCTTTGCAAATCATTGAGATCCTCAGCAGAAATGATTGAGAATACCAATAGCTTGGGGAAGACAGAACTTTTCTGTTCTGTTAATTGCTTATCTGCTTACAGAGTTAAAATGGTTACTTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446:ENSMUST00000106108:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types