RnoINT0169184 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144920624-144924533:-
Coord C1 exon
chr5:144924321-144924533
Coord A exon
chr5:144920775-144924320
Coord C2 exon
chr5:144920624-144920774
Length
3546 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TTGTTTTATTCTGTTAATAGAAA
3' ss Score
6.55
Exon sequences
Seq C1 exon
ATTCGACATGAAGTTAATTACCAGAACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTCTCTAAGTTCCGCTCTGCTAACAACCTCACTATGAACTGTTGTGAGAACTGTGGGGGTTACTGCTATAGTGGCTCTGGACAGTGCCATGTGCTTCAGATTGAGGGACAGTCTAAGAAGTTTTGTAGTTCAATGTGTGTCACCTCATACAAGCAG
Seq A exon
GTATTTGATCTTTTTAATCTTGATCTTTCTTCGTTTCAGGGGAGTTGAAATCTTTGGGTAGGATTATTTTTGAAACAGTTTAAAATAATGAGATAAGTATTCGGTTAAACTTTTACATGCAAATGGTTATTTGCCAAATGCATATCTATTAAATGTTCTGAAATAGAGTTCTATATGTCCTAGTTTCTGTACCTGCATTAAGAAATGCATCTTTTATTTTAACTGGGTAGTGGTGGTGCACACCATTAATCCCAGCACACAGGAGACAGAGGTAGGCAGATCTCTGCAAGTTTCTTTGAGGCCAGCCTGGTCTACAGTGCAAGGTCCATTACAGCCAGAGTTACACAGGACACCCTCCCCCCCCCCAGAAAAAAACACAGTAAGAAATGCATCTTTTTAGGATACGGCTTTGTTTTGTTGACACAAGGTCTCACTATGGAGCCATGGCTTCCTGGAATTTGTCAGATGACCCAGGCTAATCTCGAACTTGTAGTCCTCTTGCCTTTGCTTACCAAGTGCAGGAATCATCTGCATTTACTGTCATACCTGGCTAGGGTATGACACTTATTTCAGATATGGTTTGTGTTTTTGAATAGTAATTTTTAAGTGAAACAGACGTGAAGTAGAATTATATCTCCTAGGGAATATCTATTCTTTTTAGTGTGTAGCTTTCTGATCCTTTTTTTTTTTTTTTTTTTTTTTTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCAGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCGGGCGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCAGCTTTCTGATCTTTCAAATATATTTTTGGTTTTATTTATACTTGCTCTTCAGAAAAAAGGTCCAGATTCCATGTATGTCTGTGCATGTGTATGTTTACATAAATTTTATTGCAAATGGAACCACATAATTACAGTTGTAAACCAGAAAATAAAAAATCTTAGTAGATTGAAGAGAATTTTCTACCTTAAACACAAGTATTTATTTGAAAATTAGAAATTTGCAGAGAATAAACTAGACAAACTCTATGATAAGGATTGTCTATACTGTCTTGTTTTTTTGTTCCATATTTTTCACCGTAAATTTTGGTTAAATATTAGTTTCATAATAGGTTACCCTCAACCTATGGGGCACGACCCATTTGGGAGTGGAGTAACTCACAGCGGTAGTCTAATACCATGGCAGACACAGATGACTGCATGTTGATTTGTCACAGCAGTAGCATATTACAGTTCTGAGGTAGAAATGAAGTAATTTTATGGTCGAGGGTCACCACATCATGAGGAATTGTATAAAGGGTTGTGGCATTGGGAAAGGTGGGAACCATTGTCCTGGAGGATGGTAAAAACTTTTTATATTTTGCAGTGACTTCCTAATTTATTTCATTTGCTGATCTGACTTTTTTTCCCCTTTAATACATAGTGAATTTGTGTACAGGCCACTAAAATTAGTGAACAGTGATTTTACAGTCAGGTTTTACTATAATTACGTTCAGTTCTTTTGCTGTTGTGGGAGGGTATTTTTGCTCTGTTCTGAGAGTTAGGCTCTTACTATATAGCACTGGGTGGCCTGGAACTCGGTGTAAAAATTTAGCATTTTTAAAATTATTGGTGATTTCAGTTTAAATCTAATTTTTTAAAGTGTTTAGCCTTATTGTATAGTATATATTCATGTTTTTCTCTCACAAATGAAAGAAATGTAATATTTTCTGAAGGCTGTTCTTTTCCTGATAGTATATCAGGTACAAAAAGTTGAGTCATACTTTATAAAAGGAAAAATAGAATAAAGCATCTTAATTTTAGATTGTTTTTTATTTTAATTTTGAAAGTTTACTTTTTATGTATTAAAATATGCTGTGTTAGGGACATGGTTCTCTGTTCCCCACTCTAAATCTTCCAAAAGTACAAGGGCCTCACATGGTGGTGCACACCTTTGGCTCTAAGAATTTGGGAATTAGAGGAAGGCAGATCCCTGAGTTGGAGGCCAGTTTGGTTTACATAGGTAGTTTTAAGCCATTTAGAACTACGTAGTAAGACGCTTTCTTCAAAGCAAAAACACAAACAATCCTTACCCCAACAAAATCGTCCAAACTATAGAACTTTAATATAATGAATAAGACAATCTAATATGTTTACGTACAGTTTTACATGGGTAAAACTCTTCTTAGACTACATGGATTCTAGGTTTTTGTTTTTTTTTTAACCTGATAATGGCTGTGAAAACTAGGCTGTATAAAGTAAGACCAAAAGCACTAATACACAGCCAGCACATTGTAGATGGTTAGTACTTCTGCTTTTCTTTCTTTAATTCTAAATTGTTCAAGCAAACATTGCATCCACTTTCTGTTTTGTGGGAAGACATACTTCTGATATATAAATAAATGAAAAGATGGTGTGATGGAGGTATAATGAGGTTCTGTGTATCACAAAGAAAGCATAGCTGATAGGAGTAGGTGTGTCAGCAAAGTTTACAAAGTTATGTTTTGATTCAAGTCTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACTAAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTGTACCACTGAGCTAAATCCCCAGCCCCTGATTCAAGTCTTTTAAGTTAGTGTTTACAGTTCTGATCTGGGAGTTAGAAGATGTTCCAGATCAGGCTTATCCTAATATACACGCATTTCAGTGTCACGTTTACAGTTTATCACAGAAAGGGAAGATCTTCAAGTCTTTAGTTGTAGCTTGAGCAGTGTTTTCTTAAGTGTGTGACAGGGTAATAGTACTTGACCTTATTTTCTGTTGAGTCCCTAGTTGAGTGACGATTGCTCTGTCAGAATCACTGTTTTCTGCTCTCATCTTGTTGCTTACAATATGCATGGTAAAGGAGAGGATTGAAACTGAGTTTCCTAAGTTTACTGATTTCCTTAAATTAGAATTTTGGTGCTTTAAATAGTATCTCTCATAGGAATCTCTTTACGCTTTTGGCTAATATATAAAAGAGAGCCAGTTGTGTTATGTATAAAACAACTTTGTAAAAGCAATGTTTATCAGTTAATAGGTCTTAAATTAACTACTAGGTTATACCTAACACTGTTTCCTAATGAGATACAATAGAAATATGGAAGTCTCACATGGTTCCATGGTGTGTTGCTCAGTGAAGTACTTTTCACTTTCGTATGCATACATATGTACTATGCATACTCAGAATTTCAGAATAACATACAAGTTTCCTTTGTGAAGTCTTTCTGAGGATTGTAATAATGGTCATTTGAAAACTGCTGTTTCAAATACTTCATGAGTAAGGGGAAAAAATGTACCATGCAGGACCCTGGGATTGACTCCTGCCACCACACATAAAAAGTAGTAATATTTCAACAGAGTTAAGTTAAACATTTCAAAGAATTATGCTTTATGAATTTGGTAAAAATGAATGTTGTTTTATTCTGTTAATAG
Seq C2 exon
AAATCAGCCAAAATAACACCATGTGCGCTTTGCAAATCATTGAGATCCTCAGCAGAAATGATTGAGAATACCAATAGCTTGGGGAAGACAGAGCTTTTCTGTTCTGTTAATTGCTTATCTGCTTACAGAGTTAAAATGGTTACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
NA
C2:
PF064679=zf-FCS=PU(5.0=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]