MmuINT0180553 @ mm9
Intron Retention
Gene
ENSMUSG00000042408 | Zmym6
Description
zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]
Coordinates
chr4:126770156-126778004:+
Coord C1 exon
chr4:126770156-126770327
Coord A exon
chr4:126770328-126777853
Coord C2 exon
chr4:126777854-126778004
Length
7526 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TATTATTGCTATCCTAATAGAAT
3' ss Score
6.13
Exon sequences
Seq C1 exon
AGACATTTTAAATCCGATGGATGTGATCACAACTCAGTTTGAAAATTCCTCTCTCTGCAAAGATTTCTGCAGCCAGTCATGCCTATTTTCTTATGAGCTAAAGAAGCCTGTTGTTACCATATATACCAGTGGCATTTCAGCAAAGTGCAGTATGTGTCAGAAGGGCACTGAT
Seq A exon
GTAAGTACATGCTACATTTGACTTTCTTTGCAATTCTACTCGGGAAATGATATCTGTCTGTCTCTTTCTCTCTTCTTCCTTCCTTCCTTCCCTTCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCTTCCTCTCTCTCTCCATTTCTCTCAATCCTCCTACCCGCCCTCCCCCCCCAGGGTTTTGCTCTGTATTCTAGACTGGTCTCAACCTTGAGTCAGTCTTCCTGTTTCAGTCTCCCCAGTGCAGAGTTCATAACGCCACCGTTCCTAGCTAAAAGGCTCTAAGGTTTTTTTTTGTTTTGTTTTGTTTCTTTTTTTGTTGTTGTTGTTGTTTTATGAGGCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCAGGAACTCACTCTGTAGACCATCCAGGCTGGCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTACCACCACTGCCCACATTCCTAGCTAAAAATCAGAGATTTTTTAAAAAAAATGTGGCTCTGCTTATTTGTATGTGTGTATCTGTATTATGTCCTAGATTTGATTTGAAATTAAATATCAAAGCAAGGTGTAGTGGTACACAATGTTAATCTCAGCTCTTGGGAGGGAGAAGCAGGTGGATCTCTGAGAGTTCCAGGACACTGAGCTACATAATAAAAACCTGTCTTGAAAAAAAGTAAAAAGAAGGAGGCGGAGAAAGAGGAAGAAGAAAAGTAGGAGGAGGAGAAAGAAGAAGAAGAGGAGGAAAAGGAGGAAGAGGAGGAGGAGGAGAGATAGATGATCGTTGGGTAGTTGGATGGATGAAAGTGTGATACAAGGTCTTTGAAGTGATGCTTGCTTTTTAAAACTTCCACAAGTAACAGCCTCACTGAACTGTTGTGAGAGCAGTGGGAGCTATGGTTACAGGAGCTCTGAGCTGTCCATGTCAGGTTTACTTCAGCATACGTCCTGTGTACAAGCAGTGTGGATTTCTGCTTCGGAGCACATAGGCTTTCTCCTGAGCTATGCAAGGGTGAGCTGCAGAGAGAAAGCAGGAGTTCCTCCGAGGTCGTTCTTATGTGATTTTTCTCTCCAGGGAAGTGGGAGAGACTCCATGTAGGGATGGTTGTATAATGACATGACTAAGATGAGATAGGCCACTTTTACAATTTTTATTCATGGCTCAGAACTTAAGAGATATAACTTTATGATTTGTTGTATGAAATATTGATAGTAAAAACTCTTTTTTTTCCCATTTTTTTCGAGACATGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCCGGCAGTAAAAACTTACTATAAATAAACTGTGAGCAAGAGTTAAAAACAAAAAAATCTGATTGAAACTAAAGGAAACATTTTTTTTCACATAACATTTTTATTGATCTGCTGGGAGTTTCACATCATATACCCTGTCTTAGTCAGGTTTCTCTTCCTGCACAAACATCATGACCAAGAAGCAGTTGGGGAGGAAAGGGTTTATTCAGCTTAAACTTCCATACTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAGGCAGGTCAGAAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTGCCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATACCCCACAGATGAATCTCGTGGAGGTACTTCCCCCCACTGAAGCTCCTTTCTCAGTGATAACCCCAGCCTGTGTCAAGTTGACACATAAAACCATCCAGTACATACCCCAATCACAATCCCTTCCCAATCCTTCTATTTCTGCCCCCTTTGTGATCTTCCCCAACCAAAGAAGTAAAAGATAAAAATAAAGGAAAAGAAAAGAAAAAAGTTCACTTTGTGTTATCTGTATACTCGCTGGAGCATGGTCAAATTCTTAGAGGCCTCCCCCTTGAAATAGACCTCTCTCACACCTGCCTCAGAAGCCATTGTGGAGAGCTACTCTTTGGCATCTCCGTCACTTGTTAAGAGTTCTCTTTGGTGACTTCCTGTGTAGGCTGTTACTTTGGTGGGGGTGGCGGCAAGGGTAGGCATTGTCACAGAAGCCTTTCATGTCTTCTCCTCAAGTGTGCATCTGCAGTCATCGATATCACAGCAAAGGTAGCCTCCTTGTTCTTCACACTCAATGGGAACATGGGTCATGGACCTCTAGTAGGTTTCTGTTGACAGCACAGACTACAAACATGTCCCTCTGCTGCAGTGGAACCACAGACCAGACAAAGCCCTCAGAGGCTGCCTGGATCACTGACATCACCATGGCCTCAGGGGTAGCACAGGCCACTCAGTGTAAATATGGCCCTCTGAAGCAGCAAGGACCCAGACATCACCATGGCCTTAGGCAGCAGAGCCTTCAGTGTCACTGTAGCCTACTGACATCAATGTAGCTTCAGGCTGTAGCACAGGCCATGGACAGTCGAATGCCTTCATGGTAACACTGGCCACAGGCATCAGGACAGATGCAGACATGATGTGGCCCTCAGCATTAGCAGGGGGTCAGGGCATCACCATGGCCTCAGGTTGGAAGCATAGACCACTCAGATCCGATGGTGGCAGGACTGCCCACAGACAGTGACATGGCCTCAGCTGGCAGCACAGACCTCAGATACGTGCTTGTTCTTTGATGGTAACTTGGACCATGAACATCAACACAGATCCTAGCTGTAGTAGGGCCTCAGACCCAGATATGGCCCTTAGAAGCAGCAAAGACCCAAAGTCATCATGGCTTCAGGTGGCAGCTCAGGCCACCTGTATAAGCATGGCTTCCATCGGCAGCATGGCTCCCAGGCTTTGACATGGCCCCAGGCTGCAGCATGGATCATTGATCTCTGCACAGCCTTCAGTGGAAACTTGTGCCATAAACATCATTCTAGCCTTCAGTAGGGCTCCGGACTCAGCCAGTTGGGTCTCAGATGGTCACATGCCTGGCTGGCTTGTGCCTGCTTCTGGTTTCTTTTAACGATGTATTTTGGAATGAATTCTTAGTTGATTTGGTACCATCATCATGTTGTAATACTTTTGGTACTTATTAGGTACTGTTTACTGTAATAAATAAAAGTCTCGTTAAGTATGACGTTTGTTTCAGTTTTAATTATTACTGGTTGAGATTTCTTTTTATTCTTTGTGTTTATATGTATATGGGCATGCATATGTGAGCTGTTGGGAGGCTTCATCAGTTACTCTGTACCTTATTTGCTAAGGCTAGGTTTCTCAGTTGTGTAACTTAAAATTTTTTTTTAATGTTTATTATTTATTTATTTATTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATACCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCACCACCATGCCTGGCTTTAACGTTTATTTTTAATGATGGTTTAAAAAATGCTTTAATCTCCCTTTTAGCCCACCACCCACCAAAGGTATTAGAAAAGAAAGGATACAGGGGATGTGGACCTGTTTAGAAAGGTTCTTTGGAACAACTCCCATCTGTGTTGTCTGGAAATCAACAGTTCACATGTCAACAGCAACAGCTGGATCCGCTCACAAACAATTCACGGATATACCAGCAGTCCAGTGCAATAGAACTGAAACAACATGAATCAGGAGGGGTGACACTACCTCCTGATTCATGAGACAGCCAGGTCTAGGCCTCAGCACAAGTCAGCAGGAGGGATTCTGACAGGAACGCCAGGAACAGTTTCCCGCTGTGTTTCTCTCAGCAAAGCAAAGATCAGCGAAGACACTAGATCAGCAGGGTCATACAGCTGCTCTCTAAACAAGCCTAGCTCAGTCTGTCACTGTCCATGGAGTCCTGTTCATACTCTCTTTAAACATCATGTGTCCTCCATGGGTCTTGCCTCAGAACATAAGTCTGTCTCAGCTGACATCAGCTAACTCACTGTTAGTCTAAGTCTGCAGAAGTGTCAAGAAACTGTAATATCACCAGAAGTTTTTGGGTACATTTCCCTCTATGGAGTCCTGACAAATAGAGCTCAACTATTCAATATAAAACTTGTGTGTCATTAACAAAGAATCCTTCATCATGTGTCCTTTAGCTTGCTTGCTTTAGCAAAACATACTTTCACCTGTGTCTACCCCAGTGAAATATTTCTTCAGGAGCCTGCCTCAGCCTTTCACCTGTGTCCACTTCAGGAAAACACTCCTTCATGTGTTTGCCCCAGCAAAACACCAACACAACTGCTCCTCTAAAGAAGCCTTAAGTTTCCACTTCACAGTTGAACTCACGACTCATCAGTTCAGCGAGTCTATTTCGCTCTCTTGCCCTGGATATCCCAGCTCTGTCTTCCAAATGCTGGAATTAAGTAGAGGCCACCAAACCTACTTGGCATTTATGTGGGTTCTAGGGGCTTGAATTCTAGTCCTTTTGCCTGTGTGGCAAGTGCTTTAACTATTGATCCATCATCCTTGCCTTTTTTTTTTTTAAGTTCTTATAAATGATGTAAATGATAATAAAATTTTTAGGAACAAAGGAGATAGTTCAGTTGGTAGAGTGCTTGCAGACATGAGGACTTGAATTTCATCCCTGTAACGCACCTAGCAGGTTGTGTTGGTGTACCCATTTTTTCCCCCCTCCGGTTTCTGTGTGGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTCGAACCCAGAAATCCACCTGCCACTGCCTCCTAAGTGCTGGGATTAAAGGTGTGCGCCACTACCACCCAGCGAGAGACTGTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCAACGTAGATGACAGCTGACTAATACCCAGGGTTCGTCCCTGACTTCCACACACGTGCATATATGTGCATGACACACTGCACACAAAACCACACAATTCCCTTGCAAATTTTTGCTTTGTTAATTTCTTGGAGCAGTTTGAAATGTCCTTATCATTTCAGATATCATCAAAAAGTATTTTAGCCGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGTAGAAGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACATAGAGAAACCCTGTCTCAAAATATATATATATTTTAATCTTTAGGAATTGCTGCTACTGTAGGCAGTCAAGTTACTACTGTCACAGGAAAATAACAGCTGCTTTTTATCTGTGACCTAAGTGCCAGGCCTTCCCTAATTTGGGACTGACTTTGTACTCTTCCAGCTTTCTGGGGCCCACTTTTAGTAAGCAGATTGTGTGAAACGTCATAATGTACTATATTTCCTAACCATTTACTTCCTTAGTAAAAGGTCTACTATTGTGTTAGTGACAATCTTAGAATTAACAATGCTTCCCATGGCATTTGTCTTATGGGAAGCATTCAGAAGTAAATGATGTGTAAGTGGGGGTCATTATTATTTGTTAAAACATGGGTAGACTCTATAGTTTACTGTATAATTATCCCTACTTATTGTGATTCTCAGCTTGATAAGGAAATTTTTTTTTTTTTTTAAAGATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCTGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCGATAAGGAAATTTTTGTAGGATCTCTTAAGCATCACTTCTGTCTCTTGTTGGAAAGTCACCCAGTTTAGGTGGTTCTAAGTGATAAACTTTTCTATACTGAGGTCCATGCTTCATGGATTATCTAATATTTGCTTATGATTAGGAAGGTATGTCATCAGTGCATTGTTCATGACTTACAGTGTGCTTTGTTGTTAATTGAGTAGTTACTGTTTTGTTTTGTTTTTCAATCCTGTAGCTAAGGCTGGCTTTAGGTACCTGATCCTTTTGCGTTCATCTTCCAATTATTGGGACATCACACCTGGCTTTTCTTTCTTTTTTTTCTTCATTACTTAATATCTTTTTTGTTTCTTTTAAAAATCCTTATGTATGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCGTGTACATGTAGTGAGGAATCTGGAATTTTGGTTTCTTTAAAAAAAAAAAACACGGGGGCTGGTGAGATGGCTCAACAGATAAGAGCACCCGACTGTTCTTCTGAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCCTAACAAGATCTGGCGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACAGAAATACTATAAGAATGTTTTCATTTTAATCCCAGGTATGGGATAGGGAGCTGCTTCAGTTGTCTGCAGCAGATATGATCTGCCTCGTGCCCTAGCAGAGGCATGTTTTTGCCAGCTGCAGATAGTTTCTCTGATTGTGTGACTTTTTGGGATTCTGGGGACTTTTCAGAGGATATATAAATGTTAGGGCCCAGAGAGGCAGAGTGGGATGTTGGTGGGTTGTTGGTTGTTGTTGATGGTGGTGGTTATTGTTGGTTGAGGTTTGTTAAGTAGTCATGCTCAAAGAAGAGACAACAATAATAATAAGAAATTAGGTATCCCCAAGGAACTCAGTGTCCCTAATTAGCAGGACGTAGTCTAATGGTAGCGTCTTCCCCCTTTCTGACCCCTGACTTTATTCAGGTGTATCTCTTCTCTTTCCCCTCTCTCCTTCTGTCTCGCTTATCTAGTGTTAGGGGCTGAAAGAGGGTGGAGAAGCATAGAATAAAGAAGCTACGTGTATATATTTATGTGTACGCATTTTTGTATATTAGTGAACAAGTGTGCACACCATAGCATATGTGTATCAGAGGACAACAACCAGTGTTGTCCTGCACCTCCCTTGTCTGAGGCAAGGTCTTTTTTCACTTCTAGGTGTGTATGTCAGGTTGGCTAGCTGTGAAGTTCTGGTGATTCTCCATCTCTGCCTCCCATCTTGCTGTAGGAGCACTGGGATTATACATCCACACTGTGTCTGGCTTTGTGTGGGAACTGGAATTTTGAATTGATATCCTCATGTTTTTGCATAGCAAGCACTTTACCCACTGGGCTGCCTCTGGCTCTTTTCTTATTTAAAACAATAATGCAATTATGTTTGAACTTATGCTTACATACATCTTATATTATTGCTATCCTAATAG
Seq C2 exon
AATTTGGCCCCGAAGCCACTCTATGCCTTGGGGAATTCATCGAGGCTGTCTGCTGAAATGATTGAGACTACAAATGACTCAGGAAGAACAGAGCTTTTTTGCTCTATTAACTGCTTATCTGCGTACAGAATTAAGACTGTTATTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042408-Zmym6:NM_177462:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(70.5=53.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: