HsaALTD0007382-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000198315 | ZNF192
Description
zinc finger protein 192 [Source:HGNC Symbol;Acc:12983]
Coordinates
chr6:28116186-28117402:+
Coord C1 exon
chr6:28116186-28116602
Coord A exon
NA
Coord C2 exon
chr6:28117261-28117402
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CAACTGTCTGTTGTTTCCAGGTC
3' ss Score
10.23
Exon sequences
Seq C1 exon
ATGGCTGAAGAATCAAGAAAGCCTTCAGCCCCATCCCCACCAGACCAGACTCCTGAAGAGGATCTTGTAATCGTCAAGGTAGAGGAGGATCATGGTTGGGACCAGGAATCTAGTCTGCATGAAAGTAACCCTCTTGGCCAAGAAGTGTTCCGCCTGCGCTTCAGGCAGTTACGCTACCAGGAGACACTAGGACCCCGAGAAGCTCTGATCCAACTACGGGCCCTTTGCCATCAGTGGCTGAGGCCAGATTTGAACACCAAGGAACAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCTTGACCATCCTACCTGAGGAGCTCCAGACACTGGTTAAGGAACATCAGCTAGAGAACGGAGAGGAGGTGGTGACCCTATTAGAGGATTTGGAAAGGCAGATTGATATACTAGGACGACCA
Seq A exon
NA
Seq C2 exon
GTCTCAGCTCGCGTACATGGACATAGGGTACTCTGGGAGGAGGTAGTACATTCAGCATCTGCACCAGAGCCTCCAAATACTCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGCCCCAAGAGTCACAAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198315-3-4,4-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=NA C2=0.613
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.6),PF0310514=SPX=PU(28.9=41.7)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0),PF0310514=SPX=FE(23.4=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAGAACGGAGAGGAGGT
R:
ACCCTATGTCCATGTACGCGA
Band lengths:
102-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)