HsaINT0186383 @ hg19
Intron Retention
Gene
ENSG00000198315 | ZNF192
Description
zinc finger protein 192 [Source:HGNC Symbol;Acc:12983]
Coordinates
chr6:28116094-28117402:+
Coord C1 exon
chr6:28116094-28116602
Coord A exon
chr6:28116603-28117260
Coord C2 exon
chr6:28117261-28117402
Length
658 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CAACTGTCTGTTGTTTCCAGGTC
3' ss Score
10.23
Exon sequences
Seq C1 exon
AAGTACCCTTAGAAAGAGGCCCTCAGAAGAGTCTTCTCTTAAGAAGATAAAGAAGGTAGTGGAAACGAACTTCCTGAGCTTTTCAGGCTCTAATGGCTGAAGAATCAAGAAAGCCTTCAGCCCCATCCCCACCAGACCAGACTCCTGAAGAGGATCTTGTAATCGTCAAGGTAGAGGAGGATCATGGTTGGGACCAGGAATCTAGTCTGCATGAAAGTAACCCTCTTGGCCAAGAAGTGTTCCGCCTGCGCTTCAGGCAGTTACGCTACCAGGAGACACTAGGACCCCGAGAAGCTCTGATCCAACTACGGGCCCTTTGCCATCAGTGGCTGAGGCCAGATTTGAACACCAAGGAACAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCTTGACCATCCTACCTGAGGAGCTCCAGACACTGGTTAAGGAACATCAGCTAGAGAACGGAGAGGAGGTGGTGACCCTATTAGAGGATTTGGAAAGGCAGATTGATATACTAGGACGACCA
Seq A exon
GTAAGTAGAAGGAGGTATGCGTGCTATGACTGTGGGAGTCCTGGAAGCTTGGTAGAGGGACATAGGCATCACAGTGGGAGAGCAGATGCTTAGCATCAGTTTCTGTTGGATAAGGATGACAATAGTTTTAGTGTAGTATGACTTGTAGAGTTCTTTTTACTTTTGTAAAGGATATAAATCCATTTTGTTTTTGTCGTCATAACATCCCTACGACTGTATTGTTCTTGTTTGCCAGATGGGAACTTGATGCATAGGAAGCTTAAGTTAATTTTTCAGGGGTATCCAAATAATTAAAGGTAAATTTGAGACCAGAAATCAGGCTTTCTAGTTCCTTATTAAAAGATTTTTCTACTGCATAGCACTGCTTTAAGTTTGTTGTTTTCCTCCTTCCTCTGCCTTAGGAGTACAAAATATTGGTGTTCTGTGTAACAGGGAAGGCATCAGCAGAAATCTTTTCCTTTAGTACTAAGCAAAAATGATGCCTTTCTTTCTGTGCTCATTACGTATTCGTGTTCCTTACTGTCCCTAAGAAGTGAGGAAGATTCTGCTGCTTCCTTCCCCAAGCATATATCCCTGTAGATGTGTTCGTGGTCCTCTTTCATTGTTCATTACATTTCGCAAAGGGATTCCTTATTATCCAACTGTCTGTTGTTTCCAG
Seq C2 exon
GTCTCAGCTCGCGTACATGGACATAGGGTACTCTGGGAGGAGGTAGTACATTCAGCATCTGCACCAGAGCCTCCAAATACTCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGCCCCAAGAGTCACAAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198315-ZNF192:NM_006298:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.613
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.6),PF0310514=SPX=PU(28.9=41.7)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0),PF0310514=SPX=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAACTACGGGCCCTTTG
R:
TCTCTTGTGACTCTTGGGGCA
Band lengths:
350-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)