RnoINT0169040 @ rn6
Intron Retention
Gene
ENSRNOG00000053635 | Zkscan8
Description
zinc finger with KRAB and SCAN domains 8 [Source:RGD Symbol;Acc:1308983]
Coordinates
chr17:45082732-45084623:+
Coord C1 exon
chr17:45082732-45083231
Coord A exon
chr17:45083232-45084454
Coord C2 exon
chr17:45084455-45084623
Length
1223 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TGCTGTCCCATTATTTCTAGGTC
3' ss Score
9.63
Exon sequences
Seq C1 exon
AAATACCCTGGAAGTCCTTGGAAGACTTTTAAGATACAGAAGATAGAGGGAAGGGGTCTTCTGAGCTTTTCTGCTCCTAAATGGCTACAGAATCAAGAAAGCCTTCTTCAGCCCCATCTCCACCAGACCAGGCTCCTGAAGAGGACCTTGTCATTGTCAAGATAGAGGAGGATCATGGTTGGGATGAGGAATCTAGTGTGCATGAGAATAACATACCTGGCCAAGAACTATTTCGCCTACGCTTCAGACAGCTCTGCTACCAGGAGACATTAGGACCTCGGGAAGTTCTGATCCAGCTCCGTGCACTTTGCCATCAGTGGTTACGGCCAGACTTGAACAGCAAAGAGCAGATCCTTGAACTGCTGGTGCTGGAACAGTTCCTGACCATCCTGCCTAAGGAGCTGCAGACTCTGGTTAAGGAGCACCAGTTAGACAATGGAGAAGAGGTGGTGACCCTGTTGGAGGACCTGGAAAGGCAGATTAATGTCCTAGGGCAACCA
Seq A exon
GTAAGTAACTGTGCATGCTGTGACTGAATTCCTGGAAGTTTGGTAGAAAGACATTGGCTTCACTTTGAGGAGTAAATTCTGTTCACTAGATTCTCAGAAACGCAAATGAAAATAATTTTAATTTTTTAAAGGATAGAATCCTTTTTTGTTAAGGATAGAATCCATTTTCAACCTTATAAGATTCCCACAGTTGTCCCTGCTTGCTAAATGGGACCATAATACACAAAGAGCTCATATTACTTTTTTTCTGAGGTACTAATACCAATGGTCAGGGTTTGGGCCAGATGTTTCTACATCTTTGGCCTCTTGTGCAAGGAATTGAAATAAAGACCCATACAAATTATACAGATAGCAAGGAAACTTTATTCAATGGTAGAACAATAATACAAAACAAGAAACATAGTCAAGAGTCTTAGGCCACTCAAGTAAGACTACTCAAGTACTCAAGGACCCCAATTATTTGAGGCTGTTTCTTCTGGGTCTGAGAGAAGAGGGAGTTTGTTTGCTAACAAGCATGGTGAGGATGGTCCTTTGTTTTCTTGGAGGACACAATTTGCCTTGTTGGCTCATGCATCCAAAATCAATCTAGGTCTGATTGACTTCCTTATCCAGAAATAACTGGAATATGATTGGTTACAAGCTAAGTGTCATGGTTGTTAGGGGGAGGAGAAATTTATTCCATTGTTCAGAGTAGGGTGTAGGTATGGCTCAATGCAGCTGGGATCCTAACAGGTGCTACGTGCATTGTTCAGAGAGCAAGGGATGCAAGACAGTTCTTTATACAAAACAAGTAAAGTCCATCTTGCTAAACTATTGGTGTGTTTGTTTGCCTTGCCTGGATAATTAAAGATGACTACTTCCTAGAATATAAGCTTCCTTCTATCAGATAAGCTTCTGGATAAGCTTCCTCCTATCAGAAAACCGTTTTGCAATTTTGCGACCCTATTGTAGTTTTCTGAGTTATTCATCCTAAGTTGGAGTTCTATATCCTAATATTGGTGTTTGATATAGTAGAAAAACATCAACAGAAATTTTTTCTTTAGTACTGAACAGAAACAAATCCCTTCTTTCTGTGCTAATTTCTTGCTGCCCTAGGAAGTAAATGACATTATACTGCTTGCTTTCCCAAATATGAACACTTATGAAAGGCATTGACTGCACTACCACCTTCACTTCATTTTTCAGAGGAATTCTGTGTGACTCTGCTGTCCCATTATTTCTAG
Seq C2 exon
GTCTCAGCTCATACACATGGGCACAGAGTACTCTGGGATGAAGTCATACCTTCAAAATCTGCATCAGAACCTCCAAGTATTCATGTCCAACCCATGGCAACCATGCCTAAATCTCCTGTGCCCCAGAAGCCACACGACAGAGGAGAGAGGCCAGATTTCACTTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053635:ENSRNOT00000088280:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.702
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGTGGTTACGGCCAGAC
R:
ATCTGGCCTCTCTCCTCTGTC
Band lengths:
345-1568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]