MmuINT0178711 @ mm9
Intron Retention
Gene
ENSMUSG00000063894 | Zfp192
Description
zinc finger protein 192 [Source:MGI Symbol;Acc:MGI:1913815]
Coordinates
chr13:21617007-21618890:-
Coord C1 exon
chr13:21618388-21618890
Coord A exon
chr13:21617176-21618387
Coord C2 exon
chr13:21617007-21617175
Length
1212 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TGCTGTCCCATTGTTTCTAGGTC
3' ss Score
9.93
Exon sequences
Seq C1 exon
AAGTGCCCTGGAGGTTCTTGGAAGACTTGTAAGAAGATACAGAAGGTAGAGGAAAGAGATCTTCTGAGCTTTACTGGCCCTAAATGGCTACAGAACCAAGAAAGCCTTCTTCAGCCCCATCTCCACCAGACCAGGCTCCTGAAGAGGATCTTGTCATTGTCAAGATAGAGGAGGATCATGGTTGGGATGAGGAATCCGGTGTGCATGAGAACAACACACCTGGCCAAGAACTGTTTCGTCTACGCTTCAGACAGCTCTGCTACCAGGAGACATTAGGACCTCGGGAAGCTCTGATCCAGCTCCGTGCATTTTGCCATCAGTGGCTGCGGCCAGACTTGAACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCTCTGGTTAAGGAGCACCAGTTACAGAATGGAGAGGAGGTGGTAACCCTATTGGAGGACCTGGAAAGGCAAATTAATGTCCTAGGGCGGCCA
Seq A exon
GTAAGTAGCTGTGCATGCTGTGACTGAATTCCTGAAAGCTTTGTAGAAAGACATTGGCTTCACTTTGAGGAATAAATTCTATTCACTGGTTTCTTGTAAATGCAGATGAAAATTTTAATTTTGTAAAAGGTAGAATCCATTTTCATCCTCCTAAGATCCATCCCACACTTGTATTATTGTCCTTGCTTACTATATGGGACCATAATACACAAGGAGCTTATATTACTTTTTTTCTGGGGTACCTGTAACACAAACAGTCAGGGTTTGGGCCAGATATTTCTACATCTTTGGCCTCTTATTCAAGGAATTGGAACAAAGACCCACACAAATTGTACAGATAGCAAGGAAATGTTATTCAATGGCAGAACAATGGTACAAAGTAAGAAATACAATCAAGAGTCCTAGGCTACTCAAGTGAAACTACTCAAGTACTCTAGGGCCTCAATTATTTGGGGCTTCTTCTGGGGTTCAAGAGAAAAGGGAATTTGTTTGCTAGTAGGCATGATGAAGATGAATCTTTGTTTTCTTGGAGGATACAATTTGTCTTATTGGCTCATGCACCCAAAATCAGTCTAGGCCTGTTTGACCCCTACCTTCCTTACCCAGAAGTAACTGGAATGTGATTGGGTACAAGCTTTCTAAATGTCATGGTTGTTAGAGGGAGGAGAGATTTATTCCCTTGTTCTGAGTAGGGTGTAGGTACAGCTCAAAGCAGGTGAGGTCCTATATCACTAGCAGGTGCTAGGTGCATTGTTCAGAGAGCAAGGATGGGGGACAGGTCTTAATAGGAAGCGAGTAAGCAAAGCCCAGCTTGCCTTGCCTGGATAATGAAAGATGACTACTTCCTAGAATATGAGCTTCCTAGGGTTGTTTTGTTTTTGTTTTTGCTTCCTAGTTTCTTATCAGAAGAATATTTTGCTATTGTGTGACCCTATTTTAGTTTTGTGGGTTATTCATCCTAAGTTAGAGTTCTGAATCCTAATATTGGTGTTTGATATAGTAGAGAAATATCAACAGAAATTGTTTCTTTAGTACTAAACCGAAACAAATACCTTCTTTCTGTACTAATTTCTTGCTGCCCTAGGAAGTAAATGACATAATATTGCTTGCTTTCCCAAATATGAACACCCATGAAAGGCGTTGACTCCACTACCACCTTCACTTCATTTCTCAAAGGAACTCTGTGTAACTCTGCTGTCCCATTGTTTCTAG
Seq C2 exon
GTCTCAACTCATACACATGGGCACAGAGTACTCTGGGATGAAGTCATACCTTCAAAATCTGCATCAGAACCTCCAAGTATTCACGTACAATCCTTGGCCACCGTGCCCAAATCTCCAGTGCCCCAGAAACCACAGGACAGGGGAAAGAGGCCAGATTTCACTTACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063894-Zfp192:NM_139141:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.301 A=NA C2=0.652
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGCATTTTGCCATCAGTG
R:
TTCCCCTGTCCTGTGGTTTCT
Band lengths:
347-1559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: