HsaINT0186383 @ hg38
Intron Retention
Gene
ENSG00000198315 | ZKSCAN8
Description
zinc finger with KRAB and SCAN domains 8 [Source:HGNC Symbol;Acc:HGNC:12983]
Coordinates
chr6:28148316-28149624:+
Coord C1 exon
chr6:28148316-28148824
Coord A exon
chr6:28148825-28149482
Coord C2 exon
chr6:28149483-28149624
Length
658 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CAACTGTCTGTTGTTTCCAGGTC
3' ss Score
10.23
Exon sequences
Seq C1 exon
AAGTACCCTTAGAAAGAGGCCCTCAGAAGAGTCTTCTCTTAAGAAGATAAAGAAGGTAGTGGAAACGAACTTCCTGAGCTTTTCAGGCTCTAATGGCTGAAGAATCAAGAAAGCCTTCAGCCCCATCCCCACCAGACCAGACTCCTGAAGAGGATCTTGTAATCGTCAAGGTAGAGGAGGATCATGGTTGGGACCAGGAATCTAGTCTGCATGAAAGTAACCCTCTTGGCCAAGAAGTGTTCCGCCTGCGCTTCAGGCAGTTACGCTACCAGGAGACACTAGGACCCCGAGAAGCTCTGATCCAACTACGGGCCCTTTGCCATCAGTGGCTGAGGCCAGATTTGAACACCAAGGAACAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCTTGACCATCCTACCTGAGGAGCTCCAGACACTGGTTAAGGAACATCAGCTAGAGAACGGAGAGGAGGTGGTGACCCTATTAGAGGATTTGGAAAGGCAGATTGATATACTAGGACGACCA
Seq A exon
GTAAGTAGAAGGAGGTATGCGTGCTATGACTGTGGGAGTCCTGGAAGCTTGGTAGAGGGACATAGGCATCACAGTGGGAGAGCAGATGCTTAGCATCAGTTTCTGTTGGATAAGGATGACAATAGTTTTAGTGTAGTATGACTTGTAGAGTTCTTTTTACTTTTGTAAAGGATATAAATCCATTTTGTTTTTGTCGTCATAACATCCCTACGACTGTATTGTTCTTGTTTGCCAGATGGGAACTTGATGCATAGGAAGCTTAAGTTAATTTTTCAGGGGTATCCAAATAATTAAAGGTAAATTTGAGACCAGAAATCAGGCTTTCTAGTTCCTTATTAAAAGATTTTTCTACTGCATAGCACTGCTTTAAGTTTGTTGTTTTCCTCCTTCCTCTGCCTTAGGAGTACAAAATATTGGTGTTCTGTGTAACAGGGAAGGCATCAGCAGAAATCTTTTCCTTTAGTACTAAGCAAAAATGATGCCTTTCTTTCTGTGCTCATTACGTATTCGTGTTCCTTACTGTCCCTAAGAAGTGAGGAAGATTCTGCTGCTTCCTTCCCCAAGCATATATCCCTGTAGATGTGTTCGTGGTCCTCTTTCATTGTTCATTACATTTCGCAAAGGGATTCCTTATTATCCAACTGTCTGTTGTTTCCAG
Seq C2 exon
GTCTCAGCTCGCGTACATGGACATAGGGTACTCTGGGAGGAGGTAGTACATTCAGCATCTGCACCAGAGCCTCCAAATACTCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGCCCCAAGAGTCACAAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198315:ENST00000330236:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=NA C2=0.586
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.6)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAACTACGGGCCCTTTG
R:
TCTCTTGTGACTCTTGGGGCA
Band lengths:
350-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains