HsaEX0073146 @ hg19
Exon Skipping
Gene
ENSG00000198315 | ZNF192
Description
zinc finger protein 192 [Source:HGNC Symbol;Acc:12983]
Coordinates
chr6:28109716-28117402:+
Coord C1 exon
chr6:28109716-28109807
Coord A exon
chr6:28116094-28116602
Coord C2 exon
chr6:28117261-28117402
Length
509 bp
Sequences
Splice sites
3' ss Seq
ATCATATTTTCTTCATGAAGAAG
3' ss Score
2.39
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCTTTCATCGCCTTTACTCCCCGACCTTCCTTCGAGTCTGTTTATCCGTTGCAGCCTCCCTTCCCCACGACGGGGCGCCTCTGCAACTCACA
Seq A exon
AAGTACCCTTAGAAAGAGGCCCTCAGAAGAGTCTTCTCTTAAGAAGATAAAGAAGGTAGTGGAAACGAACTTCCTGAGCTTTTCAGGCTCTAATGGCTGAAGAATCAAGAAAGCCTTCAGCCCCATCCCCACCAGACCAGACTCCTGAAGAGGATCTTGTAATCGTCAAGGTAGAGGAGGATCATGGTTGGGACCAGGAATCTAGTCTGCATGAAAGTAACCCTCTTGGCCAAGAAGTGTTCCGCCTGCGCTTCAGGCAGTTACGCTACCAGGAGACACTAGGACCCCGAGAAGCTCTGATCCAACTACGGGCCCTTTGCCATCAGTGGCTGAGGCCAGATTTGAACACCAAGGAACAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCTTGACCATCCTACCTGAGGAGCTCCAGACACTGGTTAAGGAACATCAGCTAGAGAACGGAGAGGAGGTGGTGACCCTATTAGAGGATTTGGAAAGGCAGATTGATATACTAGGACGACCA
Seq C2 exon
GTCTCAGCTCGCGTACATGGACATAGGGTACTCTGGGAGGAGGTAGTACATTCAGCATCTGCACCAGAGCCTCCAAATACTCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGCCCCAAGAGTCACAAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198315_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.281 C2=0.613
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=67.6),PF0310514=SPX=PU(28.9=41.7)
C2:
PF0202312=SCAN=PD(0.1=0.0),PF0310514=SPX=FE(23.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCATCGCCTTTACTCCCCG
R:
CTCTCTTGTGACTCTTGGGGC
Band lengths:
230-739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)