BtaEX6098764 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007074 | ZNF192
Description
Bos taurus zinc finger protein 389 (ZNF389), mRNA. [Source:RefSeq mRNA;Acc:NM_001145131]
Coordinates
chr23:30285893-30294439:-
Coord C1 exon
chr23:30294257-30294439
Coord A exon
chr23:30286727-30287238
Coord C2 exon
chr23:30285893-30286078
Length
512 bp
Sequences
Splice sites
3' ss Seq
GTCATTTTCTGTCCCCAAAGAAG
3' ss Score
5.14
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CGGAAGTGGCTTGGGGCAACATGCATGTTGGCCGGCGGTGTGCCTCTTCACGTCTGGAAGTTAGGGGCTGGAGGGTCCTGGGCCGGCTGCTGCTTTCGCACCTCTCTTCTTGCAGCCGTTCCTGTGGGTCTGTCCACCGTTTGTAGCATCCTTCCCCACCGCGGGCCGCCCCTGGAACTCACG
Seq A exon
AAGTACCCTTAAAGAAGAGGCCCTCAGAAGGTTCTTCTCTTAAGAAGATAAAGAAACATAGTAGAAACGAGTCTCCTGAGCTTTTCTGGCCCTAAATGGCAGCAGAATCAAGAAAGTCTTTAGCCCCATCCCCACCAGACCAGGTTCCTGAAGAGGACCTTGTAATTGTCAAGGTAGAGGAAGATCATGGTTGGGACCAGGAATCAAGTCTACATGAAAATAACCCTCCTGGCCAAGAGCTGTTCCGCCTACGCTTCAGGAAGTTATGCTACCAAGAGACACTAGGACCCCGAGAAGCTCTGATCCAACTCCGCGCACTTTGCCATCAGTGGCTGAGGCCAGATTTGAACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTAGAGCAGTTCTTGACTATCCTGCCTGAGGAGCTCCAGACTCTGGTGAAGGAACATCAGCTAGAGAATGGAGAGGAAGTGGTGACCCTACTGGAGGATTTGGAAAGGCAAATTGATATATTGGGACGGCCG
Seq C2 exon
GTCCCAGCTCGTCCACATGGACATAGGGTACTCTGGGAGGAGTTGATGCATTCAGAATCTGCACCGGAGCCTCCAGATACTCAGCTCCAACCTGTGGCAATGCAGCACAAATCTGCAGTTCTCCAAGGGCCACATGATAGAGGTGAGGAGCCAGATTTCACTGCTGAGGAGGGAGGAAGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007074-'0-6,'0-3,3-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.232 C2=0.858
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=67.6)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGCTTGGGGCAACAT
R:
CCTCCCTCCTCAGCAGTGAAA
Band lengths:
357-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]