RnoEX0101944 @ rn6
Exon Skipping
Gene
ENSRNOG00000053635 | Zkscan8
Description
zinc finger with KRAB and SCAN domains 8 [Source:RGD Symbol;Acc:1308983]
Coordinates
chr17:45078556-45084623:+
Coord C1 exon
chr17:45078556-45078723
Coord A exon
chr17:45082732-45083231
Coord C2 exon
chr17:45084455-45084623
Length
500 bp
Sequences
Splice sites
3' ss Seq
ATCATTTTCTGTTCTGAAAGAAA
3' ss Score
2.83
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
AGTGGCTGTGGGGCAAGTTGCGTGCTGGCCCACTCTGAGGCTCCGAGGGTTTGGAAGTTAGCGGCTGGAGGGGGTCCCGCTCGGGTTCGGTGTCGGTCGCGATTCCTCGCGCGCTTCCTGGTCCGCGCTGTGCGGCCTCCCGCCCTCGGGCAGCGTGGGGAGCTCTCG
Seq A exon
AAATACCCTGGAAGTCCTTGGAAGACTTTTAAGATACAGAAGATAGAGGGAAGGGGTCTTCTGAGCTTTTCTGCTCCTAAATGGCTACAGAATCAAGAAAGCCTTCTTCAGCCCCATCTCCACCAGACCAGGCTCCTGAAGAGGACCTTGTCATTGTCAAGATAGAGGAGGATCATGGTTGGGATGAGGAATCTAGTGTGCATGAGAATAACATACCTGGCCAAGAACTATTTCGCCTACGCTTCAGACAGCTCTGCTACCAGGAGACATTAGGACCTCGGGAAGTTCTGATCCAGCTCCGTGCACTTTGCCATCAGTGGTTACGGCCAGACTTGAACAGCAAAGAGCAGATCCTTGAACTGCTGGTGCTGGAACAGTTCCTGACCATCCTGCCTAAGGAGCTGCAGACTCTGGTTAAGGAGCACCAGTTAGACAATGGAGAAGAGGTGGTGACCCTGTTGGAGGACCTGGAAAGGCAGATTAATGTCCTAGGGCAACCA
Seq C2 exon
GTCTCAGCTCATACACATGGGCACAGAGTACTCTGGGATGAAGTCATACCTTCAAAATCTGCATCAGAACCTCCAAGTATTCATGTCCAACCCATGGCAACCATGCCTAAATCTCCTGTGCCCCAGAAGCCACACGACAGAGGAGAGAGGCCAGATTTCACTTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053635-'1-1,'1-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.243 C2=0.702
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=67.1)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGGGGCAAGTTGC
R:
CTTTATAAGTGAAATCTGGCCTCTCT
Band lengths:
334-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]