MmuEX6057540 @ mm9
Exon Skipping
Gene
ENSMUSG00000063894 | Zfp192
Description
zinc finger protein 192 [Source:MGI Symbol;Acc:MGI:1913815]
Coordinates
chr13:21617007-21622989:-
Coord C1 exon
chr13:21622814-21622989
Coord A exon
chr13:21618388-21618890
Coord C2 exon
chr13:21617007-21617175
Length
503 bp
Sequences
Splice sites
3' ss Seq
ATCATTTTCTGTTCTGGAAGAAG
3' ss Score
1.28
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCTTCCGGAAGTGGCTGTGGGGCAAGATGCGTGCTGCCCGGCTCTGCGGCTCCAAGGGTTTGGAACTTAGCGGCTGCAGGGGTCCCGCTCGGGTTCGGTGTCCGTCGCGTCTCCTCGCGCGCTTCCCTGTCCGCGCTGTGCCGCCTCCCGCCCTCGGGCAGCGTGGGGAGCTCTCG
Seq A exon
AAGTGCCCTGGAGGTTCTTGGAAGACTTGTAAGAAGATACAGAAGGTAGAGGAAAGAGATCTTCTGAGCTTTACTGGCCCTAAATGGCTACAGAACCAAGAAAGCCTTCTTCAGCCCCATCTCCACCAGACCAGGCTCCTGAAGAGGATCTTGTCATTGTCAAGATAGAGGAGGATCATGGTTGGGATGAGGAATCCGGTGTGCATGAGAACAACACACCTGGCCAAGAACTGTTTCGTCTACGCTTCAGACAGCTCTGCTACCAGGAGACATTAGGACCTCGGGAAGCTCTGATCCAGCTCCGTGCATTTTGCCATCAGTGGCTGCGGCCAGACTTGAACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCTCTGGTTAAGGAGCACCAGTTACAGAATGGAGAGGAGGTGGTAACCCTATTGGAGGACCTGGAAAGGCAAATTAATGTCCTAGGGCGGCCA
Seq C2 exon
GTCTCAACTCATACACATGGGCACAGAGTACTCTGGGATGAAGTCATACCTTCAAAATCTGCATCAGAACCTCCAAGTATTCACGTACAATCCTTGGCCACCGTGCCCAAATCTCCAGTGCCCCAGAAACCACAGGACAGGGGAAAGAGGCCAGATTTCACTTACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063894-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.301 C2=0.652
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=67.1)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGGAAGTGGCTGTGG
R:
CGTTGTAAGTGAAATCTGGCCT
Band lengths:
344-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: