HsaINT0186382 @ hg19
Intron Retention
Gene
ENSG00000198315 | ZNF192
Description
zinc finger protein 192 [Source:HGNC Symbol;Acc:12983]
Coordinates
chr6:28109716-28116602:+
Coord C1 exon
chr6:28109716-28109807
Coord A exon
chr6:28109808-28116093
Coord C2 exon
chr6:28116094-28116602
Length
6286 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
ATCATATTTTCTTCATGAAGAAG
3' ss Score
2.39
Exon sequences
Seq C1 exon
GCTTTCATCGCCTTTACTCCCCGACCTTCCTTCGAGTCTGTTTATCCGTTGCAGCCTCCCTTCCCCACGACGGGGCGCCTCTGCAACTCACA
Seq A exon
GTGAGTACGGTCGGGCTCTGGGCCGGAGGAAAGTGGGTGCTTTGTGGCTGGTCCAGGCCGCAGCTGAGGACTGGCCTGAGGGGTCCGGAGAGGGGCCTGTGCGGTGTTCGGCGCCGCGGACCGATTCTGACGCCTTAGTTGCTGTTGCAGGCAGAGTACGTCCCCACGAATTGCCCTTGAACTTTTTGCGAGGGAACCTTTTATGAAGCTTTCTTCATAGATAATCGTGTTGTGGTATGTTTTTGTAGTCGATCTTGTTTATCTTAAAATGGGGAACGCCCCCCCCATGTTATTTTTTATCCAACTATTTCCAGAGTCTGAATTGTTTTCACTTAGCGCTCTTTTGCGTTTAGGTCACAACAAAATTCTCAGTTTTTAAAAAAGACATATTTTGCTTTTGGAAGCCCCGTTTATCCATGGAAACCAATTTTTGCTGTTACTCTTCTTTCTTTAGTGTATTCAGAAACTGGTGGTGTGTTGACTAGATAATTGTACGAAAGTTTTTTTTTTTTTTTAATTTCAGGGTAATTCAGAATTCAACATTATCAGAATGCCTATTTCATTTGTTAAAGCAAACTGAAGTTAGCCAACGAGGAACTCTGGGAGGGCCCCATTTCCAAAACTCTGGTTAGTCATGAGTAATTTTTGTCAGGCTACTTTGACTGCCACCACCACCTTTAAAAACATATTTCTGTTGTTTGTTAGTTCCGTTGAGTATATTTACGTAGCAATCATTGTTTTAGCAAATACATACATGTTTTGAATTTCTGTTGTTTAAATGTAAAATGTGATAGATGTTAATTAAAACTTTCAGCTAATGCAATTTGAGATAACAAAGCATAGTATTGGCTTCACCTACTTTTTCTTGGATTTTAAATCCTGGAAAATGTCTTTTTTGTTTTGTTTTCAGTTCCCAAACATTTCTCAAATTAGACATAGTCTGAAGGAAGAATACATTCCTTCCACAACTATTGAAAAAATAATACTGTTAAAATTGAGTTGTGCCTTCAGCATCTCACAGGATTACAGTATTTAAAATCCAGAGGAAGCTTTAAAGATTGCCTTTTAAACTCATGTAAACTTGACTAGGTGTTCTTTAAGGAGACTATGTAAAAATCAGTCTGTATCCACAAAGTGCTCACCAACTTAATACAGACATGTACGCACAAAACTGAGAGGAAGGTACATACTGGAGTAATTTTGCACTCAGTTATTTATAGGTTGTAATTCTCAAAAACCAGCTGATCAGAGAGGGAAGAGACTTAAAAAAATGGAAAATTAGCCACTAAATAGAATAATCAAGATGAGCAATGGGCAAGACCTGTTGGCTGATTTGGTATAAAAAATGAACAAACCTGATAATTAGCTGGTTTTCATCAGTGTTGTTATTGAGACTTTTTAATACCACATCAACAATATAAAGTTCTTGAATGCTGCGCACTTCACATTAAAATATTTTATAGCCTCCTGTACTGGTAAGTAGTGGGATTGCACCTGTGAATAGACTCTGCACTCAAGCCTGAGCAACATAGTGAGACCCTGTCCCTAAATAATAATAATAATATTTTATAGCCATTATGGATGAGGATTGCTCAGTAATAGATGGCCAGTTGTTCAGTAGTTAAAAATGAACCTTGGCTTTAAGGAAATTTATAAGAAAACATGGTAAGACTACCACTATATAACATCACATTCTAAACAGAATTTATGTCCCATGTATTGACCTTTAAGTTTTTAACATTAAACCATAAGTAGCTATTTTAAGAAAATTTAAGAGTTTGTTTTGATTTGAAAAATTAAATTATTTTAAAATTAGCTAAGACCATTTTAAAATAAATTATCTTAAAATTATAGATAATTTATTCAAACAAAAACAAATTGTCAAAACCAAATTGATTACCCTTTCTCAACAAAATCTCAGCATCTTCCTCAAATTCACTCTTCCCCCAAATCTCACTATTCTAGCAAATTCCTCCACTTTCCTGTAAAGTCATAATCAATGAACTATACCCCCAATGTTAATTGATATATTTAACCATATCTTTTGCTCCTTGGTTCTTCTGATCTGTAGTTTACTCTCCACCCTGTTGTTCCCGGCCTTGTCTAACTTGAAAAATAATTTTCAAATTCCCTTTCTTTTCTGTACACACTCTCTATGTAGGATTTGTTTGTATGTTTGTTTGTTTTTAACCTTCCTGGCATTCTTGGATGGCCTTTGAGTCTGTGAACTCTGCCGAAATTGAGTATACAATTTTGTATCTGTGGACATTTTGCTGGAAAGAAGTTCTGTGTTTTCTTTAGGTTGAAGAGTCTATAAACCAACCCCCCTCGCCCCGTGCCACAACTCCAAAAACTGAAAAGATAAGCACTGCCTTGATGATCCGTATGGGGAACTGTATGTACAGTAATCTGATTTTTTTCCTAAGTACCTATCTCTTCTTTGTGGACTATAGGTCTCTGGTTTTATCTTGATGTTAGCATCTCATGACAACTGGTTTAGGGTATGCTACCTTTACTTACACTCTTCTTCATTCTCTACAGTATCTTTGAAATACAAAGATAATGGTCACCTCTGTCAACAAACATTTGCAATAAGGCCATGGCCACATTCTCACAATGTGATAAGTCCTATATTTGGACCATGTTAAAAATGCTTTGGTAGGAATGACAAATGGCAGGGGGATGACAGAGAAGAACTCATGAAAAAGGTAATAGATAAATTAGAGTTAAGAGTTGAATGATTTTAGGCCGGGCACAGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGAGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGTTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCAAACAAAAAAAAAAAGAGTTGAATGGTTTTAGCTGGACCAAGATTTATCAACCTTGGCATTGACACTTTGGGCCAAATAATTCTTTGTGGTGGGGGCTGTGTTGAGCATTGTAGGATCCCTGGCCTCTATGTACAAGATAATAGTAGCACCCCTTACCCCCAAGTTGTGACAACAAAAATATTTACAGACATTATGAAAGGTCCCTGGGATGGGGGTAAGGACAATATTGCCATCAGTTTTGAACCACTGAGCTAGAGTAAAGAACTCTGTAGTAGAATGGAAGTATGAGAAAGCCACAGCCCAGAAAGGCTTTATGTAAGTGAGTTTAAAGTAGATATAGCCAGCCAGGTTTACATTCATAAAGGGCCTTGCATACCATGCTAAAAAATTTGGTCCCTATTGAAATATTTTCAGGAGGTGAGTCATGTTAGTCATATTACATATTTTTAAAAAATCTCTGGCAGTACAGGGCTACTGTAAAAAAAAAAAGTATCATAAACCTGGTAGTTTAATAGAATAGACACTTACTGTCTCATAATTAGGAAGGCTAGATGTCCAAAATCAGAGTGTCGCCAGACCCATGCTCTTCTAGCTTCTTGTTTTTACTGACAAACTTTGGCATTCCTTGGCTTGCAGCTGCACAACTCCATCTCTGCTTCTGTAGTCACTTAGCTCTCATTCATCTGTGTGTGTGTGTCTTCACATGACCTTCTCCTTTCTCAGAGTCTGTCTCTGTGTCTTTTTTCCTTTTAAAAGTGTGCCAGTCATATTGGTTTAATGGCCTACCCATTCCAGTATAACTTCATCTTAACTTGATTACATCTGCAAAGCCCCATTTCCAAATAAGGTCACATCCACAGGTACTAGAGGTTAGAATGTCCGCATATCTTTTTGAGGGACACATTTCAACACACAGTAGGCAATATTGTGGAACATGAATGGGAAAAAAGCATAACCAAAGTTACCATTGCAGTTCTAGGCAAGAGATGATGTCTATACCAAGGATGGAAACCATAGACATATATTTCACAAAGAAATAGGATCATGAAATTGAACTTTTTTCGGACATCAGGTCTTGTTTCTAAATCTCACTCTTACAAGAAATATAAACATGTTCTGTGTTTGCAATTGTAAATATGGCTAATGTTCTTCGATTCTATCAATAAGATAAAAGATATGGACCTTTGCCCATGGGGAAAATACAATTAAGTTTTGAAGTCAGAATTCCTTTGGAACTAATAAATATACAGTTATGGGAAAAGTAACATTAAAGCAATACACATTTAAGTAACAGAGGTATAGAATGAGAGGAAAATAATTTCCAATTGGAGTCACCAGGAAAGGATTTTTAAAGGCAACAGTATTTTATCTTGTCCTTTAAGAAAGTAGTGTCGGTACTGATGAAAGAAGTCAAAGAAGACTTCAACGGAGAGACACATTGTGTTCACGGAATGGAAAACTCACTGTTGTTGAGATATCAGTTGTCCCTAAAATGAGCTATGGATTCAATACAAATCCAATTCAATAATTTTTTGTAGAAATTAATACACTGATTCTAAAATGTGTATCAAAAGACAACAGAACTAGGAAAGTGAAAATAATTTTGAAAACGAACAACAAAGTTGCAAGACCCACCTACTTGATTTCAAGATTTTAAAAGTTACACAATCAAGACTATTCTGTATTGGTGAAAGAATAGATGTATAGGTCAATAAACAGAACAGAGATTCCAGAAATAGACCCTTACATATACATACATATAGTGAACTGATATTTGACAAATATACAAAGACAGTTAAGTAGATAAAGGAGAATCCTTAAAATGAACCTCCATCCATACCTCAAATTCTATATAAAAATTAACTCAAAATGGATCATAGGCCTAAATGTAAAACCTAAAACTATAAAACTTTTAGTAAAAAACAGGAGAAAATATTTGTAACCTTGGATTAAGCAAAGATTTCTTAGATATGACATCAAAAGCACAGTCAATTAAAAAAATGAACTTTTTTTCTTCAAAAGGCCCTATGAAAAGGATGAAAAAGAGGGAATACTTGCAAATTACATATCTCATAAAGGACTTGTGTCCAGAGGATGTAAGAAACTCAAAACTTAATTTTAAAATAACTAAATTTAAAAATGGGCAGAAGTTTTGAACAAATACTTCACTAAAGAAGATATATAGATGTTAAATAAGCACATAAAAAGATGCTCAACATTATTAGTCAGTAGAGAAATGCATACTAAAGCCATATGAGATATTAAAACCATAATGAGTTGCCACTACACATACACCTATTAGAATATCTAAAATTAAAAACAAAAACAATATCAAGTGCTAGTCAGATTGGAAAACAGTTTTGCAGTTTCTTATAAAGTTATACATATATGTATTTTATGACACAGCAATTTTACCTCTGAATATTTGCCCAAATAAAATGAAAACTATATTCACACCAAAACTCATGCAGATGTTCATAGTGGCTTTATTCATAGTGATTAAAAAACAAAAACAACTCAGATATTGTTCAACTGGGAAATGGATAAACATTTAAACATTCCCACTCCAGAATCTCACATAAATAAAATCATATAGTATGTAGCCTTTTGAGTGTGGGAGTAGACTTTTGGGTTGTAGTTGTCAATAGGGCATCCAGGTTCCTTGGAGTGCTCCATAGAGAGTTTCTGAGTTGGAGGTCACGTCCATAGTAGAGGAAGTTAACCTTGAGATAGGAGGAAAGATGAGGGGCACAGGTAGGATAAGGAATGTTAGGTGGAGAAGAGCAAAGTGTTAGGAAAGTTTTTGACAATACCTTGAATTAGATTATGTAGAAATTAGTCTCATCTGTTAAGAGTAAGGGAAAGGTTGAGAGCTGAAGCGTGTAGAACCAGATTAGTACAGCTGGTGTATCAAAGACTAAAAGGGGTTAAATGAGCAGCCCTGAAGGCCAGCTGAGATTAAACACAAAATTTCAACTAGACCCAGTCTACATGGTTTCCTGACTTTGCTTAGCCATGTTCCACATCCCCAAACAGGGTGATGAAAGCAGAAGGAAGGGGTTTTTCTATGGATGGGTTTGGCATGGCTGGCATGACAGAAAGTTAAGGAAGTAAGAAGTTATTTCTGGAACAGTGGGGAGGATCATTTAATTGGCCGAGCCATGAAGTCCGTGTCATACTAAGGAACTTGTTAAGATACCATAGTTAGTTACAATGACTTTTGACTTGCCTTAACACTATCATATTTTCTTCATGAAG
Seq C2 exon
AAGTACCCTTAGAAAGAGGCCCTCAGAAGAGTCTTCTCTTAAGAAGATAAAGAAGGTAGTGGAAACGAACTTCCTGAGCTTTTCAGGCTCTAATGGCTGAAGAATCAAGAAAGCCTTCAGCCCCATCCCCACCAGACCAGACTCCTGAAGAGGATCTTGTAATCGTCAAGGTAGAGGAGGATCATGGTTGGGACCAGGAATCTAGTCTGCATGAAAGTAACCCTCTTGGCCAAGAAGTGTTCCGCCTGCGCTTCAGGCAGTTACGCTACCAGGAGACACTAGGACCCCGAGAAGCTCTGATCCAACTACGGGCCCTTTGCCATCAGTGGCTGAGGCCAGATTTGAACACCAAGGAACAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCTTGACCATCCTACCTGAGGAGCTCCAGACACTGGTTAAGGAACATCAGCTAGAGAACGGAGAGGAGGTGGTGACCCTATTAGAGGATTTGGAAAGGCAGATTGATATACTAGGACGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198315-ZNF192:NM_006298:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.281
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6),PF0310514=SPX=PU(28.9=41.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)