HsaEX0073145 @ hg19
Exon Skipping
Gene
ENSG00000198315 | ZNF192
Description
zinc finger protein 192 [Source:HGNC Symbol;Acc:12983]
Coordinates
chr6:28109716-28116602:+
Coord C1 exon
chr6:28109716-28109807
Coord A exon
chr6:28112109-28112202
Coord C2 exon
chr6:28116094-28116602
Length
94 bp
Sequences
Splice sites
3' ss Seq
AAGTTCTGTGTTTTCTTTAGGTT
3' ss Score
9.89
5' ss Seq
ACTGTATGT
5' ss Score
5.19
Exon sequences
Seq C1 exon
GCTTTCATCGCCTTTACTCCCCGACCTTCCTTCGAGTCTGTTTATCCGTTGCAGCCTCCCTTCCCCACGACGGGGCGCCTCTGCAACTCACA
Seq A exon
GTTGAAGAGTCTATAAACCAACCCCCCTCGCCCCGTGCCACAACTCCAAAAACTGAAAAGATAAGCACTGCCTTGATGATCCGTATGGGGAACT
Seq C2 exon
AAGTACCCTTAGAAAGAGGCCCTCAGAAGAGTCTTCTCTTAAGAAGATAAAGAAGGTAGTGGAAACGAACTTCCTGAGCTTTTCAGGCTCTAATGGCTGAAGAATCAAGAAAGCCTTCAGCCCCATCCCCACCAGACCAGACTCCTGAAGAGGATCTTGTAATCGTCAAGGTAGAGGAGGATCATGGTTGGGACCAGGAATCTAGTCTGCATGAAAGTAACCCTCTTGGCCAAGAAGTGTTCCGCCTGCGCTTCAGGCAGTTACGCTACCAGGAGACACTAGGACCCCGAGAAGCTCTGATCCAACTACGGGCCCTTTGCCATCAGTGGCTGAGGCCAGATTTGAACACCAAGGAACAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCTTGACCATCCTACCTGAGGAGCTCCAGACACTGGTTAAGGAACATCAGCTAGAGAACGGAGAGGAGGTGGTGACCCTATTAGAGGATTTGGAAAGGCAGATTGATATACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198315_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.281
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6),PF0310514=SPX=PU(28.9=41.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTATCCGTTGCAGCCTCC
R:
ATGGGGCTGAAGGCTTTCTTG
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)