MmuINT0178710 @ mm9
Intron Retention
Gene
ENSMUSG00000063894 | Zfp192
Description
zinc finger protein 192 [Source:MGI Symbol;Acc:MGI:1913815]
Coordinates
chr13:21618388-21622980:-
Coord C1 exon
chr13:21622814-21622980
Coord A exon
chr13:21618891-21622813
Coord C2 exon
chr13:21618388-21618890
Length
3923 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ATCATTTTCTGTTCTGGAAGAAG
3' ss Score
1.28
Exon sequences
Seq C1 exon
AGTGGCTGTGGGGCAAGATGCGTGCTGCCCGGCTCTGCGGCTCCAAGGGTTTGGAACTTAGCGGCTGCAGGGGTCCCGCTCGGGTTCGGTGTCCGTCGCGTCTCCTCGCGCGCTTCCCTGTCCGCGCTGTGCCGCCTCCCGCCCTCGGGCAGCGTGGGGAGCTCTCG
Seq A exon
GTGAGTGCGCTGGGCCGAGCAGGGGCGCTCGGGCAGCGGAGGCCCGAGAGCGGGGAGCGGGTCGGTTCAGGGCCTGCCGCCGCTGAGCAGGCCGACACCCGGCCCCAACTTCCTACGGGATGGCTCTCCTCATCGCCAGTCATCATGTATATAATTTTGCACTCGCTCTTACTTGTAAAGCCGGCCCGTGTACCAACTGTTTCTACTCAGCAGTTTTGCCGATCGGTCTCAAAATTCATTTTTAAAGATAATAATTTTTTTCTTTTGAAGCCTCTACCCCACGTGGAAATCTTTGATTTTTTTTTTTTTTGTTACTCTTTTTTTTTTTTTTCTACCCATAAAAGAAGTATATTATGAAAGTAGTTCATGTAATGGCTGAACAGTTGTATGCAAAAGAAATACTTTAAGTAATTCTGGGGTAACAAAATTAAACCTTATTCAGAATACTTTGCTTACCTAGTTTATTAAAGCTAACTGAAATAGAATCTTGAAAATTCGGTAGGTTCCCATTCCCAAAACTCGGGTCATTCATGAGTAATCTCTGTTGGATTTCTAAGACGTTGACCACCACTTGACCACATACTTCTATTTGTCCGATTCACTTAAGTATTGCTATGCAGCAATCATCATTTTAGTGAATGTGCACGTTTTGAGTTCCTTGTGGTTAAATATAAAAATGTCAGTCTTAAAAGCATTCATCAAAGCAACTTCCTTGAGAAGCCCATAGCCACGCTTGTGCGTCTGGCCCTCTCCTGAGTGCCTTTCTCCTAACCCTCATGCTCAAGCCTTATTAAAATAACTTTTAAAATCTCCAAAACAAACAAACAAAATGAATGAATGCCATTTCAGATAACTACAAAGCATGTTTGTTTCATCTACTTCTTCTTAATCTCTAAAACCTGGAGATTATCATTCCTGGTTTGTATTCGGTTCTCAGACATCTCTCAAGTTTAATTAATCAGAAAGGAAAGTACATCTCCTGCATCTCTTGAGAAGCCAGTATTTGAGTTGTGCCTTCCTTAGTTTTCAAGGCTTTAACATTTTCGATCCCGAATAAGCCTAAGATTGTTGCCTTTCCGTTCATAAGGCAATCATCCTGACCAGATGTTCTTCAAGGATGGTGTGTAGGGATCAGTGTTTCTCTGTAGGTACTTTCCAACACTGCAATGTGTATGCACAAAATTATTAGAGAGGAGAATGAAATGGCCATGTATGTTGGTGCATGCCCGTAATTAATTGCATGCTGTACTAGGGTTGGGAAATCACCAGTTTGAAAACAACCTTAGAGAATTTTGTTTTGTTTGGGGAGGATAGGTAAGGTCCACTCATGCCACAGTACCGTAGTGGAGGTCAGAGGACAATTGCAGGAGTCTGTCTTCTCCTTCCACCTTGTGGGTTCTGGGAAAGTAAACTCGGGTTGTCAGGCTCAGCAGTGGGCACCTTTATCTCCTGAACGGTCCCTCAGAGCCCCGTGTCTTTTTAACAGTACACCAGTCATATTGGATTGAGGACCTATCTTATTTCAGTTATAACTTCATGTTAATTTGATTATATCTATCTACAGTCTGCAAATAGGGTACATTTATAAGCATCTTTTTTGAAGACAGTAACATGAATGATGAGAAGCTTAACCAAAGTCAAGGAGAAGTCACCACTGCAGCCTTAGCAAGGGATATATATATAAACAAGAACAGAAACCATTAGTGTATGTATTCCCCACAAAGAAACAGGGACATCAAAGTGAGCTCTTTGGACCTGGAGCCTCTACTCTTAAAACAAATCTAGACACATTCTATGTTGTGTTGTAAATATAGCGCTCTAATGTTCTTTAATTCTATCAAGATAAAATTTTGATGAGTATGAAATTAAGAGAGCAAAACGTTTTTACAACCAATAATGTACCATTGTGAGAAAAGTAGTGTGTGTAGATATCGAGAATAAGGAAAATAAATAATTTGGCCAACAATGAAAGTAGTCCAAGAAGACTTAAATGAAAAGATAACATTCATGGACTGAAGAACCCTTGTTAAGATGTCATTCATAATGTGATATCAATACTGTTAAGATAGTATTTCTAAACTGAGATATAGATTCAACACAAGTTCAATTCTAGCATTATTGGGAATCAATAAGCTTATTCTAATATATGGATCAAAAAAGCAACAACCAGCAAAGCCAAAACAGCTTCAAAAACAGAAAAGTTGCAGGATTCGAACTACTTTGAAAGTTCGAGAGAAGGTAGATATATAGGTCACAGTAAGGGAATAAAGACTCCAGAAATAGTGTTTGTGGCCAGTCAGACCTCCCCCCCACCCCCGCTCTGATGAAAAGGCAAGTGATCCAGTATATAATCCTTTCTGTGAATGGAACTACAACAGATTTTCATGTGTATGTAAGGAGGGGGACCTCCACCCACACCTTCACTTCTGCAAAGGTTAATTAAAAATCAAGCATAGGCTTAAAACCTGAAACTACAAACTTTTAGAAGAAAACCTTTGTAATTTGGAGTTAAACAGACATTTCTTAGATTTGACATCAAAAGTACAATCTTTAAAAATTTCGATAAATTATACTTCAAAAAATTTCAAATATCATCTTCAAAGCTTTCAGTTAGAAGAATAGAAGAAAGTCAATATTTATAAATAATGTATCTCATAAAGGACCTGTATCCAGAATATATAAAGAGTTCTCAAGTCTTAAACATACAAACAATATAAACCTCAATTACAAAACAATCCTGGGCAAAGCATGGAATTGCATGTAGTTCTAATACATGAGAGAGAGGCAATAGGCTCACCAGTTAAAGATCAGCCTGACTACATGATAAGACCCTATCTCAGCAGCCTAAACAAGTTAAATAAGTATGTAAGTAAACCTGGTACATGCCTGTAGGCCCAGTATTTAAGAAGCTGAGGTGTGAGAATCACAAGTTTGGCACTGTCTTTGGTTATAGAATGAGACTGTGCCAAAAAAAATAAACGCAAAGTGGGCCAAAATCTTTAAATAGATTCTTCACCAATATATGTTCAATATTGTTAGTAAAAAAACAAGTCAAATTCATAACAGATTACTATAAACCTATTATAATGTTTATTTTTTAATACAATTTCAAGTGCTAGTGGAATGCAAAATATAGCCACCTTGGAAACAATTCAGCAGTTTTTTAGATACTACACTTAAAACTCAGCAGTTTACTTCTTACTTCCATGTTTTACCTCACTGAATTAAAAACTCACAAGATCATGCATGTACACGGTGGTTTTATTCATAATTACAAACAGGAAAAAACTCATTTGGTGGCAGTGTAGATGAATAGTCATCTGTATGAGAATAAGCATACATATTGATGTTAGGTGTCTTCTGCTAAGTGAAAGTTGTCAAACTCAAACACTACTGAATTTTATTTCTGTAACATTCTGGAAGGTCTTTGGTGTGTGGGTTTAGATTTGTAGATTTTGATAAGACGTTCTGTTCTTTGCAGATCCACTGCTCCAAATAGATTTTTAGGAGTAAGAGATGAAGTCCAAGAGATAACTCTGAGACAAGAGGGAAAATAGGAAGCCTAAATAGGGTTGTGAATCTTAGGTAATGAAGAGGAAAGGATTAAAGGGTTCATAAACTAGAACAAGGTTAAGAGAGAGCTAAAGTACACAAGACAGTTGAGAGCCGCAGATGTACAAGGTACCGTGAGGAATTCAGTGTGTGCTGCTCCGGAGTACCTGATAATTAAACATAGAATTTTAGTTAGGCTGACTCTCCATGGTCTCCATCCTCCACAACCCTAAAGAGAAAGCAAATGGAAGGGTTTGTACCATGGGTGGGTTTGGGCTGCCAGATTATTTAGGGCACTCATTAATATATCTTGGTAAGTTACTATGATTTTTGCCTTACCTTAACATAGTTATCATTTTCTGTTCTGGAAG
Seq C2 exon
AAGTGCCCTGGAGGTTCTTGGAAGACTTGTAAGAAGATACAGAAGGTAGAGGAAAGAGATCTTCTGAGCTTTACTGGCCCTAAATGGCTACAGAACCAAGAAAGCCTTCTTCAGCCCCATCTCCACCAGACCAGGCTCCTGAAGAGGATCTTGTCATTGTCAAGATAGAGGAGGATCATGGTTGGGATGAGGAATCCGGTGTGCATGAGAACAACACACCTGGCCAAGAACTGTTTCGTCTACGCTTCAGACAGCTCTGCTACCAGGAGACATTAGGACCTCGGGAAGCTCTGATCCAGCTCCGTGCATTTTGCCATCAGTGGCTGCGGCCAGACTTGAACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCTCTGGTTAAGGAGCACCAGTTACAGAATGGAGAGGAGGTGGTAACCCTATTGGAGGACCTGGAAAGGCAAATTAATGTCCTAGGGCGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063894-Zfp192:NM_139141:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.301
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=67.1)
C2:
PF0202312=SCAN=PU(97.9=67.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: