RnoINT0169039 @ rn6
Intron Retention
Gene
ENSRNOG00000053635 | Zkscan8
Description
zinc finger with KRAB and SCAN domains 8 [Source:RGD Symbol;Acc:1308983]
Coordinates
chr17:45078556-45083231:+
Coord C1 exon
chr17:45078556-45078723
Coord A exon
chr17:45078724-45082731
Coord C2 exon
chr17:45082732-45083231
Length
4008 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ATCATTTTCTGTTCTGAAAGAAA
3' ss Score
2.83
Exon sequences
Seq C1 exon
AGTGGCTGTGGGGCAAGTTGCGTGCTGGCCCACTCTGAGGCTCCGAGGGTTTGGAAGTTAGCGGCTGGAGGGGGTCCCGCTCGGGTTCGGTGTCGGTCGCGATTCCTCGCGCGCTTCCTGGTCCGCGCTGTGCGGCCTCCCGCCCTCGGGCAGCGTGGGGAGCTCTCG
Seq A exon
GTGAGTGCGCTGGGCCGAGCAGGGGCGCGCGGGCAGCGGAGGCCCGAGCGCGGGGAGCGGGTCGGCCCAGGGCCTGCGGCAGCTGAGCAAGCTGACTCCTGGCCCCAACTTCCCACGGATGGCTCTTTTCATCGCCAGTCATCTTGTATAATTTTGCACTCGCTCTTACTTGTAAAGCCGGCCGGTGTACCAACTGTTTCTACTCGGCAATTTTGTAGACCGGTCTCAAAATTCATTTTTTTAAAGATAATATTTTTTTTCTTTTGAAATCTCTGCCCCTCGTGGAAACCTTTGATTTTTATTACTCCTTTTTTTTTTCTACCCATAAAAGAACTGTATTCAGAAAATGATTGATGTGATGGCTGAACAGTTATTTGCAAAAGAAGTACTTTAAGTAATCCCGGGGTAACAAAATTAAACCTTATTCAGAATACTTTGCTTGCCTAATTTATTAAAGCTACTGATAATAGATGCTTGAAAACTCGGTGAGTTCCCATTTCCAAAACTTAAGTCATTCATGACTTAGATTGCTAAGGTGTTGACCACTACCTGACAACATACTTCTTTTTATTTGACAAATCCACTGAAGTATTGTTATGCAGCAGTCATTTCTTTTAGTGAATGCACGTTTTGAGTTCCTTGTAGTTAAATATAAAAATGTAAGTCTTAAAAGCATTCCTTGGGAAGTCCATACCCACACTGTGTGTCCGGCCCTCTCCTGAGTGCCTTTTCTCCTAACCCTCATGCTTAAGCCTTATTAAAATAACTTAAAATCTCCAAAACGAAAAAAAATTGAATGAATGCCATTTCAGATAACTACAAAGCATGTTTGTTTCATTTACTTTTCCTTGATCTCTAAAACCTGGAGATTCTCATTCCTGGTTTGTATTCAGTTCTCAGACATTTCTCAAGTTTAATTAATCTGAAAGAAAACGTCTCCAACATCTATTGAAAAGCCATTATTAAGTTGAGTTGTGCCTTTCTTAGTTGTCAAGGCTTTAACATTTTCAATGAAGCCTAAGACTGTTGCCTTTATGTTCATAAGTCAATCATCCTGACTGGATGTTCTTTAAGGATGATATGCAAGGACCAGTGTTTATCTATGGGTACTTTCCAACACTGCAGTGTGTACACACCAGATTATTAGAGGGGAGAATGGAAGTGGCAGTGTATTTTGATACACGCCTGTAATTAATTGCATGCAGTACTTGGGGGACTAAGGTTGGGAAATCAGTTTGAAAACAGCCTGAATTATAGAGAGAATTTTGTTTTGTTTGGGGAGGATGGGTAAGGTCCACTCATACCACATTACCCTAGTAGAGGTCAGAGGACAATCGGAGGAGTCAGTCTACTCTACTATGTGGGTCCTGGGGAAGTAAACTTGGCAGCAGGTTCCTTTACCTCCTGAACTGTTGTGCAGACCCCTGTGCCTTTTTAACAGTAGACCAGCCATACTGGATTGAGGACCCATCTTATCCAGTTATAACTTCTTGCTAATTTGATTATATCTATGTATACCTACTGTCTGCAAATAAAGTTACATTTATAGATACTACCTAAGGCATCCTTTTTGAAGACAATTAGTAGTATTATGACACATGAATTAAGAAAAGCAAAACCAAAATCAAGGAGAAGTCATCACTGCAGCCCTAGCAAGGGATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACATGTATATGTATATATATTCACAAGAACAGAAACCATTAGTGTACATACTCCCCACAAAGAAAGGGAGTCATCAAAGTATCAAAATGAGCTCTTTGGACCTGGAGTTCTAGCTGTAGCCTCCGCTCTTAAAACAAATCTAGACACATTCATTCTCTTTTGTATTGTAAATATAGCTCTCTGATGTTCTTTAATTCTATCAATAAGATATGATTTTGATGAGGCATATGAAATTAAGAAAGCAAAACTTTTTTGCAACCAATAATTTACTAGTGTAAGAAAAGTAGTATGTGTAGATATAGAGAGTAAGGAAAATAAATAGTTTAGTCAATAATAAAAGTAGTCCAAGAAGACTTAAATGAAAAGAGATATTAATATTCGTGAACTGGAGAACCCTTGTTAAGGTATCATTCCTAATGTGATATCAATACTATTAAGATAGTATTTCTAAACTGAGCAATAGATTCAACACAAGTTCAATTCCAGCATTATTGGGAATCAGTAAGGTTATACTAATATGTGTATCAAAATTCAACAGCCAGCAAAGCCAAAACAGCTTCAAAAACAGAAAAGTTGCAGGATTAGAACTACTTGATTTTGAAAGTTTGTATCAGAGTAGAGACTCTAGTTTGTAGTCAGTCAGACTAGTGTGTGTTTGCGTTTCTACACATACACACACACACACACACACACACACACACACACACACACACACACACCGTCTCTGACAGGTAAAAAGGCAAGTGATCCAGTGTATAATCATTTCTGTGAATGGTGCTAGAGCAGATTGTCATGTGTATAAGGAAGGGACCTCCAACCATACCCTCACCTCTGCAAAGATTAATTAAAAATAGATCCTAGACTTAAAAGTAAAACCTAAAACTACAGACTTTTAGAAGAAAAATCTTTGTGATTGGAGTTAAACAGACATTTCTTAGATTAAAAGTACAATCCTTAAAAAATTTGATAAATTAAGCTTCAAAAAATTACAAATATCTTCAAAGGCTACTGTTAGAAGAATAGAAGAGAGTCAAGTCAATATTTGTAAATCATGTATTTCATAAAGGACCTGTATCCAGAATATATAAGGAGTTCTCAAATCTTAAACATACAAACAACATAAAGCCTCAATTATCAAATAATCCTGGGCAAAATATGGAATTACGTGTGTATGCATGTAGATCAGCCGGGCTACATGATAAGACCCCATCTCAGCAGCCTAAACAAGTATATAAATACACCTGGTACACAATTGTAGTCCCAGTATTTTGGAAGCAGAGGTGTGAGGATCACAAGTTTGGCACTGTCTTTGGTTATAGAATGAGACTCTGCCAAAAAGCAAAAGCCAAGTGGGCCAAAATCTTTAAATAGATACTTCACCAATATATGTTCAATATCGTTAGTAAAGAAACAAGTCAAAATTATGACACATTACTATATCCTATTATTTATTTTTAAATACAATGTCAAGTGCTAGTGGAATGCAAGATATTATGGCCACTTTGGAAACAATTCAGCAGTTTCTTAGATACTACACTTAAGACTCAGCAATTTACTTCTTACTTCCAGGATTTACCCCACTGAATTAAAAATAGCTCACACAAGATCATGTATGTACATGATTTCAGTGTTTTTATTCATAATTACAACCAGGAAAAAACTCATTTGGTAGAAGGATAGATGAATAGTCATTTGCATGAGAATAAACAGATACGGTGTTGATTAATATCAAGTGTCTTCTGCTAAGTAAAAGTTGTCGAACTCAAGCACTACTATATTTTATTTCTGTTACATTCTGGAAGGTCATAGGTATATGGGTTTAGATTTGTAGATGTTGATAAGACATTCTGTTCTTTGCAGATCCAGTGCTCCAAATAGATTTTTAGGAGTAAGAGATGAAGTCCAAGAGATAACCCTGAGACAGGAGGGGAAATAGGAAGCATAAGTAGAGTCATGAATCTTAGGTAGTGAAGAGGAAAGGGTTAAAGGGTTTGTAAACTAGAACAAGGATAATAGCTAAAGTACAGAAAACAGTTGAGAGTGGCTGATGTACACGGTGCCACGAGGAGTTCAGTGCATGCTGCTGAGGGTTACCTGATAATTAAACATAGAATTTCAGTTAGGTTGAGTTTCCATGGTCTCCATCATCCATAACCCTAAACAGAAAGCAAAAGGAAGGGTTTGTACCCTGGATGGGTTTGGGCTGGCAGTTATTTAAAGATACTCATTAAGGTATCTTGGTAAATAACTATGATTTTTTGCCTTACCTTAACATATTTATCATTTTCTGTTCTGAAAG
Seq C2 exon
AAATACCCTGGAAGTCCTTGGAAGACTTTTAAGATACAGAAGATAGAGGGAAGGGGTCTTCTGAGCTTTTCTGCTCCTAAATGGCTACAGAATCAAGAAAGCCTTCTTCAGCCCCATCTCCACCAGACCAGGCTCCTGAAGAGGACCTTGTCATTGTCAAGATAGAGGAGGATCATGGTTGGGATGAGGAATCTAGTGTGCATGAGAATAACATACCTGGCCAAGAACTATTTCGCCTACGCTTCAGACAGCTCTGCTACCAGGAGACATTAGGACCTCGGGAAGTTCTGATCCAGCTCCGTGCACTTTGCCATCAGTGGTTACGGCCAGACTTGAACAGCAAAGAGCAGATCCTTGAACTGCTGGTGCTGGAACAGTTCCTGACCATCCTGCCTAAGGAGCTGCAGACTCTGGTTAAGGAGCACCAGTTAGACAATGGAGAAGAGGTGGTGACCCTGTTGGAGGACCTGGAAAGGCAGATTAATGTCCTAGGGCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053635:ENSRNOT00000088280:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.243
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]