HsaALTD0007394-1/2 @ hg19

Alternative 5'ss

Gene

ENSG00000159917 | ZNF235

Description

zinc finger protein 235 [Source:HGNC Symbol;Acc:12866]

Coordinates

chr19:44790503-44803056:-

Coord C1 exon

chr19:44802973-44803056

Coord A exon

NA

Coord C2 exon

chr19:44790503-44793349

Length

0 bp

Sequences

Splice sites

5' ss Seq

GAGGTAAGC

5' ss Score

9.85

3' ss Seq

TATTCTCTCTATCCTTTCAGGAG

3' ss Score

10.88

Exon sequences

Seq C1 exon

GACATCAGTCCTTCAAACCAGATATGATATCCCAGTTGGAGAGGGAAGAAAAGCTTTGGATGAAGGAGCTTCAAACCCAAAGAG

Seq A exon

NA

Seq C2 exon

GAGACAGGAATCAAAATGAGATGGCAACTCTTCACAAAGCAGGATTAAGGTGCTTTTCACTGGGAGAGCTTTCATGCTGGCAAATCAAGAGACACATTGCGAGCAAATTAGCCAGAAGTCAAGACTCCATGATAAATATTGAAGGAAAGAGCTCTCAGTTCCCCAAGCACCATGATTCCCCCTGTCAAGTGGGAGCAGGAGAATCTATTCAAGCTTCTGTGGATGACAACTGTCTAGTGAATCACATAGGGGATCATTCCAGTATCATTGAAAATCAAGAATTTCCAACTGGGAAAGTTCCGAATTCTTGGAGTAAAATATATCTGAATGAGACACAGAATTATCAGAGAAGTTGTAAGCAGACTCAGATGAAAAACAAACTATGTATATTTGCTCCATATGTTGACATTTTCAGTTGTATTTCACACCACCATGATGATAATATAGTGCACAAAAGAGATAAAGTTCATAGCAATAGTGATTGTGGTAAAGATACCCTA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000159917-4-5,5-5-1/2

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.358 A=NA C2=0.116

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF143691=zf-RING_3=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134511=zf-trcl=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000291182