HsaALTD0007421-1/8 @ hg38
Alternative 5'ss
Gene
ENSG00000169740 | ZNF32
Description
zinc finger protein 32 [Source:HGNC Symbol;Acc:HGNC:13095]
Coordinates
chr10:43643859-43646202:-
Coord C1 exon
chr10:43646064-43646202
Coord A exon
NA
Coord C2 exon
chr10:43643859-43644801
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CTTCCCTCTCATTTTATCAGATG
3' ss Score
9.95
Exon sequences
Seq C1 exon
GTGCTCAGGAACAGCCCATGGAAGAATCATATGAAGAGGTGGTGACTGAGGTCGTAAGCAGGAGTGGACATGTTTGGATTTCCAACAGCTACCCTGCTGGACTGTCATGGAAGATATGCCCAGAATGTAGCGTTCTTCA
Seq A exon
NA
Seq C2 exon
ATGTGATGACTGAAGCCCACCACAAATATGACCACTCTGAGGCTACAGGATCCTCAAGCTGGGATATCCAAAATTCTTTCAGAAGAGAGAAGCTGGAACAAAAATCCCCAGATTCGAAGACACTACAGGAAGATTCACCTGGAGTGAGACAAAGGGTCTATGAGTGCCAGGAGTGTGGAAAATCCTTCCGGCAAAAAGGTAGTCTAACGTTACATGAGAGAATCCACACTGGTCAAAAGCCTTTTGAGTGCACCCACTGTGGAAAAAGCTTCAGGGCCAAAGGCAATCTTGTTACACATCAACGGATACACACGGGAGAGAAGCCTTATCAGTGCAAGGAGTGTGGGAAAAGCTTCAGTCAACGAGGTAGTCTCGCTGTCCACGAGAGACTCCACACTGGACAGAAACCCTACGAGTGTGCTATTTGTCAGAGAAGCTTCAGGAATCAGAGTAACCTTGCTGTTCACAGGAGAGTTCACAGTGGTGAGAAGCCCTATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169740-6-6,7-6,8-6,9-6,10-6,11-6,12-6,13-6-1/8
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.0),PF079757=C1_4=WD(100=21.5),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF0013017=C1_1=WD(100=25.9),PF134651=zf-H2C2_2=WD(100=10.4),PF0009621=zf-C2H2=WD(100=9.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGGACTGTCATGGAAG
R:
CCTGTAGCCTCAGAGTGGTCA
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains