RnoALTD0034584-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000023065 | Zfp637
Description
zinc finger protein 637 [Source:RGD Symbol;Acc:1559850]
Coordinates
chr4:149880189-149882824:+
Coord C1 exon
chr4:149880189-149880319
Coord A exon
NA
Coord C2 exon
chr4:149881894-149882824
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CTTCCCTCTCGTTTTACCAGATG
3' ss Score
11.04
Exon sequences
Seq C1 exon
CCCAGCCCATGGAAGCATCATACGAAGAGGCGGTGACCAAAGTCATCGAGCAGGAGCGGACATGTTTGGGTTTCCGACAGCCACTCTGCTGGACTGTCATGGAAGATACGCGCAGAATGTAGCATTTTTCA
Seq A exon
NA
Seq C2 exon
ATGTGATGACAGAAGCCCACAAGTATGATTCTTCAGAGGCCACAGGATCCTCAAGCTGGGATTTCCAGAGTTCTTTCAGAAGAGAGAAGCTGGAACAAAAGTCCCCAGATTCTAAGGCACTCCAGGAAGACTCACCTGGAGTGAGACAGAAGGTCTATGATTGCCAGGAGTGTGGGAAGTCTTTCCGTCAGAAAGGTAGTCTAACATTGCACGAGAGAATCCACACTGGTCAGAAGCCCTTTGAGTGCACCCAGTGTGGAAAAAGCTTCAGGGCCAAAGGCAATCTAGTCACACATCAGCGAATACACACGGGAGAGAAGCCCTATCAGTGCAAAGAGTGTGGGAAAAGCTTTAGTCAGCGAGGCAGTCTAGCTGTCCATGAGAGACTCCACACTGGACAGAAACCCTACGAATGTGCCATTTGCCAGAGAAGCTTCAGGAATCAGAGTAACCTTGCTGTTCACCGAAGAGTCCACAGTGGTGAGAAGCCCTATAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023065-8-6,9-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.084
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.0),PF079757=C1_4=WD(100=21.6),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF0013017=C1_1=WD(100=26.0),PF134651=zf-H2C2_2=WD(100=10.4),PF0009621=zf-C2H2=WD(100=9.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACATGTTTGGGTTTCCGA
R:
CCAGTGTGGATTCTCTCGTGC
Band lengths:
304-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]