HsaALTD0007477-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000213020 | ZNF611
Description
zinc finger protein 611 [Source:HGNC Symbol;Acc:HGNC:28766]
Coordinates
chr19:52702813-52707538:-
Coord C1 exon
chr19:52707469-52707538
Coord A exon
NA
Coord C2 exon
chr19:52702813-52706864
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTAA
5' ss Score
1.88
3' ss Seq
TTGGTGTTTATATTTTGTAGATA
3' ss Score
7.46
Exon sequences
Seq C1 exon
AGTCTCACTTTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCCTGGCTCACTGCAACCTCTACCTCCCAG
Seq A exon
NA
Seq C2 exon
ATATCTCTTCCAAATGCATGATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGAAAGTCATCACATTGGAGATTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATGACATTGAGTTTCAGTGTCAAGAAGATGAAAGAAATGGCCTTGAAGCACCCATGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAACATGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCACATATTTCAGATCAAAGGTGAAATTGGTAATCAACTTGAGAAGTCTACTAATGATGCTCCCTCAGTTTCAACATTCCAAAGAATTTCCTGTAGGCCCCAAACCCAGATTTCTAATAACTATGGGAATAATCCCCTGAATTCTTCATTACTCCCACAAAAACAGGAAGTACACATGAGAGAAAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213020-31-26,32-26,33-26-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF139001=GVQW=PU(82.6=76.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTTTGTCACCCAGGCTG
R:
GCAATGTCCCTGTGTGGATCA
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development