HsaEX1045308 @ hg38
Exon Skipping
Gene
ENSG00000213020 | ZNF611
Description
zinc finger protein 611 [Source:HGNC Symbol;Acc:HGNC:28766]
Coordinates
chr19:52704219-52714141:-
Coord C1 exon
chr19:52714015-52714141
Coord A exon
chr19:52707469-52707542
Coord C2 exon
chr19:52704219-52706864
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTTTTTAGGTA
3' ss Score
13.35
5' ss Seq
CAGGTTTAA
5' ss Score
1.88
Exon sequences
Seq C1 exon
GGACGCTTGACTTTCCGGGATGTGGCTATAGAATTCTCATTGGCAGAGTGGAAATGCCTGAACCCTTCACAGAGGGCTTTGTACAGGGAAGTGATGTTGGAGAACTACAGGAACCTGGAGGCTGTGG
Seq A exon
GTAGAGTCTCACTTTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCCTGGCTCACTGCAACCTCTACCTCCCAG
Seq C2 exon
ATATCTCTTCCAAATGCATGATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGAAAGTCATCACATTGGAGATTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATGACATTGAGTTTCAGTGTCAAGAAGATGAAAGAAATGGCCTTGAAGCACCCATGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAACATGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCACATATTTCAGATCAAAGGTGAAATTGGTAATCAACTTGAGAAGTCTACTAATGATGCTCCCTCAGTTTCAACATTCCAAAGAATTTCCTGTAGGCCCCAAACCCAGATTTCTAATAACTATGGGAATAATCCCCTGAATTCTTCATTACTCCCACAAAAACAGGAAGTACACATGAGAGAAAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213020_MULTIEX2-10/10=7-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.304 C2=0.145
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF139001=GVQW=PU(82.6=76.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTTCCGGGATGTGGCTA
R:
ATTGCCTTGCCCTGTTGACAA
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains