HsaEX1045314 @ hg38
Exon Skipping
Gene
ENSG00000213020 | ZNF611
Description
zinc finger protein 611 [Source:HGNC Symbol;Acc:HGNC:28766]
Coordinates
chr19:52704219-52715913:-
Coord C1 exon
chr19:52715832-52715913
Coord A exon
chr19:52714015-52714141
Coord C2 exon
chr19:52704219-52706864
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAATGTGTGTTTCATTTTAGGGA
3' ss Score
9.99
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GATTGATTCCTAAAGACTCATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGCCAGGCATGGCTCTTCCTCAG
Seq A exon
GGACGCTTGACTTTCCGGGATGTGGCTATAGAATTCTCATTGGCAGAGTGGAAATGCCTGAACCCTTCACAGAGGGCTTTGTACAGGGAAGTGATGTTGGAGAACTACAGGAACCTGGAGGCTGTGG
Seq C2 exon
ATATCTCTTCCAAATGCATGATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGAAAGTCATCACATTGGAGATTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATGACATTGAGTTTCAGTGTCAAGAAGATGAAAGAAATGGCCTTGAAGCACCCATGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAACATGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCACATATTTCAGATCAAAGGTGAAATTGGTAATCAACTTGAGAAGTCTACTAATGATGCTCCCTCAGTTTCAACATTCCAAAGAATTTCCTGTAGGCCCCAAACCCAGATTTCTAATAACTATGGGAATAATCCCCTGAATTCTTCATTACTCCCACAAAAACAGGAAGTACACATGAGAGAAAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213020_MULTIEX2-7/10=6-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=0.000 C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGGAAGCAGCTCAGAAG
R:
ATGGGTGCTTCAAGGCCATTT
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains