HsaALTD1002858-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000062038 | CDH3
Description
cadherin 3 [Source:HGNC Symbol;Acc:HGNC:1762]
Coordinates
chr16:68645969-68699036:+
Coord C1 exon
chr16:68645969-68654418
Coord A exon
NA
Coord C2 exon
chr16:68698093-68699036
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTTGCGGCT
5' ss Score
-19.9
3' ss Seq
TCTACCTCCAAAACCTTTAGGGG
3' ss Score
6.7
Exon sequences
Seq C1 exon
ATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCACCTCGGCCTCCCAAAGTGCAGGGATTACAGGCGTGAGTCACTGCTCCCGGCCAAATGTCTTGAGAACTTTCTGGGTAGAGATTTATTTGTTCTTAATTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCTAGGGTGCAGTGGCACAATCTCGGCTCATTGTAAACTCCGCCTCCCGGATTCAAGCGATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGACTACAGGCATGTGCCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGATCTCGATCTTCTGACCTTGTGATCTACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCTGGCCTTTTTCTTAATTTTTAAATTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
NA
Seq C2 exon
GGGAGGGGAGAGAGGGGCTCACAGAGAGGAAATGGAGGCTTGCAGCTGGCAAGAGGCAGGACCCGCCGCTCCTAACTACCTGTTCTCTGTTGCCGCAGAACCTGAAGGCGGCTAACACAGACCCCACAGCCCCGCCCTACGACACCCTCTTGGTGTTCGACTATGAGGGCAGCGGCTCCGACGCCGCGTCCCTGAGCTCCCTCACCTCCTCCGCCTCCGACCAAGACCAAGATTACGATTATCTGAACGAGTGGGGCAGCCGCTTCAAGAAGCTGGCAGACATGTACGGTGGCGGGGAGGACGACTAGGCGGCCTGCCTGCAGGGCTGGGGACCAAACGTCAGGCCACAGAGCATCTCCAAGGGGTCTCAGTTCCCCCTTCAGCTGAGGACTTCGGAGCTTGTCAGGAAGTGGCCGTAGCAACTTGGCGGAGACAGGCTATGAGTCTGACGTTAGAGTGGTGGCTTCCTTAGCCTTTCAGGATGGAGGAATGTGGGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000062038-6-35,7-35-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.792
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0104912=Cadherin_C=PD(10.5=40.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000264012fB11880
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACCTGGCCTTTTTCTTA
R:
CTCTCTGTGAGCCCCTCTCTC
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains