HsaEX6044565 @ hg38
Exon Skipping
Gene
ENSG00000062038 | CDH3
Description
cadherin 3 [Source:HGNC Symbol;Acc:HGNC:1762]
Coordinates
chr16:68676385-68678656:+
Coord C1 exon
chr16:68676385-68676470
Coord A exon
chr16:68678134-68678277
Coord C2 exon
chr16:68678501-68678656
Length
144 bp
Sequences
Splice sites
3' ss Seq
AGGAGTTTCTCTCCTTGCAGGAA
3' ss Score
8.78
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
TATTCATGGGCTGCCCTGGGCAAGAGCCAGCTCTGTTTAGCACTGATAATGATGACTTCACTGTGCGGAATGGCGAGACAGTCCAG
Seq A exon
GAAAGAAGGTCACTGAAGGAAAGGAATCCATTGAAGATCTTCCCATCCAAACGTATCTTACGAAGACACAAGAGAGATTGGGTGGTTGCTCCAATATCTGTCCCTGAAAATGGCAAGGGTCCCTTCCCCCAGAGACTGAATCAG
Seq C2 exon
CTCAAGTCTAATAAAGATAGAGACACCAAGATTTTCTACAGCATCACGGGGCCGGGGGCAGACAGCCCCCCTGAGGGTGTCTTCGCTGTAGAGAAGGAGACAGGCTGGTTGTTGTTGAATAAGCCACTGGACCGGGAGGAGATTGCCAAGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000062038-'6-19,'6-9,11-19=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=0.333 C2=0.229
Domain overlap (PFAM):
C1:
PF087586=Cadherin_pro=FE(38.9=100)
A:
PF087586=Cadherin_pro=PD(19.4=29.2),PF0002812=Cadherin=PU(18.9=37.5)
C2:
PF0002812=Cadherin=FE(53.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGTGCTGGGATTACAGGTGT
R:
ATTGTCATTGGCATCAAGGATCTCC
Band lengths:
202-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains