MmuEX6038196 @ mm9
Exon Skipping
Gene
ENSMUSG00000061048 | Cdh3
Description
cadherin 3 [Source:MGI Symbol;Acc:MGI:88356]
Coordinates
chr8:109059308-109060871:+
Coord C1 exon
chr8:109059308-109059381
Coord A exon
chr8:109060461-109060586
Coord C2 exon
chr8:109060716-109060871
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTCCTACCCTTGCTTGCAGGGA
3' ss Score
9.52
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
TAGCCTTGGCTGGACAGGGCATGCACCATGCAGACAATGGAGACATCATTATGCTGACTAGGGGGACAGTTCAG
Seq A exon
GGAGGGAAGGATGCGATGCACTCCCCACCCACCCGCATCTTAAGGAGACGAAAGAGAGAGTGGGTGATGCCACCAATATTCGTCCCCGAGAATGGCAAGGGTCCCTTCCCTCAGAGGCTGAATCAG
Seq C2 exon
CTCAAATCTAATAAGGACAGAGGCACCAAGATTTTCTACAGCATCACAGGGCCTGGCGCAGACAGTCCCCCCGAAGGAGTCTTCACCATAGAGAAGGAGTCGGGCTGGCTGTTGTTGCATATGCCACTGGACAGGGAGAAGATTGTCAAGTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061048-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.548 C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
PF0002812=Cadherin=PU(18.9=42.9)
C2:
PF0002812=Cadherin=FE(53.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCTTGGCTGGACAGGG
R:
CGTACTTGACAATCTTCTCCCTGT
Band lengths:
228-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: