GgaEX1014211 @ galGal4
Exon Skipping
Gene
ENSGALG00000026291 | CDH3
Description
cadherin 3, type 1, P-cadherin (placental) [Source:HGNC Symbol;Acc:HGNC:1762]
Coordinates
chr11:18312958-18313660:+
Coord C1 exon
chr11:18312958-18313079
Coord A exon
chr11:18313152-18313271
Coord C2 exon
chr11:18313505-18313660
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACTGCTCCCCTTCCTGCAGGAG
3' ss Score
10.26
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGACCTTTGGAGGCGGCGCGGTGCTGGATGACGTCGAGGGGCCCCACGTCGGGGTGCTGCCCGTGGCTCCCCGGGATGCCAGCAGCCCTCGGGTCCCCGTGCGGAGCAGACGCTCCCTGCAG
Seq A exon
GAGGTCCCCGATGTCCCCCGCGCTCACACCGCTCTGAGGAGGCAGAAGAGGGATTGGGTGATCCCTCCCATCAAAGTTCCCGAGAATGAGAGGGGTCCCTTCCCCAAAAACTTGGTTCAG
Seq C2 exon
ATCAAATCCAACCGCGACCGGGAGGCAAAGATTTTCTACAGCATCACCGGGCAGGGGGCGGATGCTCCCCCCGAGGGCATCTTCACCATTGAGAAGGAGACAGGCTGGATGAAGGTGACGCAGCCGCTGGACCGGGAGCACATCAACAAGTACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026291-'7-7,'7-3,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.800 C2=0.365
Domain overlap (PFAM):
C1:
NA
A:
PF0002812=Cadherin=PU(18.9=51.4)
C2:
PF0002812=Cadherin=FE(53.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGATGACGTCGAGG
R:
CTTGTTGATGTGCTCCCGGTC
Band lengths:
252-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]