RnoEX0019217 @ rn6
Exon Skipping
Gene
ENSRNOG00000020129 | Cdh3
Description
cadherin 3 [Source:RGD Symbol;Acc:621089]
Coordinates
chr19:38696027-38697615:+
Coord C1 exon
chr19:38696027-38696100
Coord A exon
chr19:38697183-38697308
Coord C2 exon
chr19:38697460-38697615
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTCCACACCTTTGCTCGCAGGGA
3' ss Score
6.94
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGGCATTGGCTGGACACGAGGTGCTCGGTGCAGACAGTGGAGGAATCATTACACTGAATAGGGAGACAGTCCAG
Seq A exon
GGAGGGAAGGGTGTGATGAACTCCCCACCCTCACGCATCTTACGGAGACGAAAGAGAGAGTGGGTGATGCCACCAATATCGGTCCCTGAGAATGGCAAAGGTCCTTTTCCTCAGAGGCTGAATCAG
Seq C2 exon
CTTAAATCTAATAAGGACAGAGGCACCAAGCTTTTCTACAGCATCACGGGGCCTGGAGCTGACAGTCCCCCTGAGGGAGTCTTCACCATAGAGAAGGAGACGGGCTGGCTGCTGTTGAATATGCCACTGGACAGGGAGAAAATTGTCAAGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020129-'7-4,'7-3,8-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.548 C2=0.288
Domain overlap (PFAM):
C1:
NO
A:
PF0002812=Cadherin=PU(18.9=42.9)
C2:
PF0002812=Cadherin=FE(53.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCATTGGCTGGACACGAG
R:
TACTTGACAATTTTCTCCCTGTCCA
Band lengths:
226-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]