DreEX6007550 @ danRer10
Exon Skipping
Gene
ENSDARG00000102750 | cdh1
Description
cadherin 1, type 1, E-cadherin (epithelial) [Source:ZFIN;Acc:ZDB-GENE-010606-1]
Coordinates
chr7:52833556-52844975:-
Coord C1 exon
chr7:52844773-52844975
Coord A exon
chr7:52833807-52833926
Coord C2 exon
chr7:52833556-52833711
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTACTATGTTCTTAGGTG
3' ss Score
9.24
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TGACTTTCAATAACTGTGATGGAAGAACAAGAACGCTCTTTCAGTCCATTGACAAGCGGTTTGAGATAAACACTGATGGAACTGTTACACTGAAGAGACAGGTGACACTTCATGAGGGCCACAAGGTGTTTTCTGTGCATGCCTGGGACTCCAGTGGCATGAAGCACACGGCATCTGTCAGAGTTGAGCGTGTCCCTGCACAG
Seq A exon
GTGGAATCTTCCTCTGATGTGGATCTGACTAAAAATAAAAGAGTAAAGAGAGGTTGGATTATTCCTCCAATCAGTGTATCTGAAAATAGCAAAGGTCCATTCCCAATGAGGCTGGTCCAG
Seq C2 exon
ATAAAGTCGGATTATGCTATTGAAACTCGGTTGGCATACAAGATCACTGGTGAAGGGGCAGATCTAGACCCTAAGGGTATTTTCACGATAGACAGACTATCAGGATGGGTCAGTGTGACTCAGCTACTTGACAGAGAAAAAAAAGCATCATACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102750-'2-6,'2-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
PF087586=Cadherin_pro=PD(68.1=91.2)
A:
PF0002812=Cadherin=PU(18.9=45.0)
C2:
PF0002812=Cadherin=FE(53.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTCTTTCAGTCCATTGACA
R:
GGGTCTAGATCTGCCCCTTCA
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]