HsaEX6044577 @ hg38
Exon Skipping
Gene
ENSG00000039068 | CDH1
Description
cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]
Coordinates
chr16:68801670-68808848:+
Coord C1 exon
chr16:68801670-68801893
Coord A exon
chr16:68808424-68808567
Coord C2 exon
chr16:68808693-68808848
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCATCTTCTTTCCTTTTAGGCC
3' ss Score
12.2
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
TGAATTTTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTTTTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAAGGCCTCTACGGTTTCATAACCCACAGATCCATTTCTTGGTCTACGCCTGGGACTCCACCTACAGAAAGTTTTCCACCAAAGTCACGCTGAATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCAG
Seq A exon
GCCTCCGTTTCTGGAATCCAAGCAGAATTGCTCACATTTCCCAACTCCTCTCCTGGCCTCAGAAGACAGAAGAGAGACTGGGTTATTCCTCCCATCAGCTGCCCAGAAAATGAAAAAGGCCCATTTCCTAAAAACCTGGTTCAG
Seq C2 exon
ATCAAATCCAACAAAGACAAAGAAGGCAAGGTTTTCTACAGCATCACTGGCCAAGGAGCTGACACACCCCCTGTTGGTGTCTTTATTATTGAAAGAGAAACAGGATGGCTGAAGGTGACAGAGCCTCTGGATAGAGAACGCATTGCCACATACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039068-'16-16,'16-14,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.166 A=0.283 C2=0.132
Domain overlap (PFAM):
C1:
PF087586=Cadherin_pro=PD(67.8=81.3)
A:
PF0002812=Cadherin=PU(18.9=37.5)
C2:
PF0002812=Cadherin=FE(53.7=100)
Main Skipping Isoform:
ENST00000261769fB11842
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATTTTTCCCTCGACACCCG
R:
CCTTGGCCAGTGATGCTGTAG
Band lengths:
244-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains