RnoEX6060457 @ rn6
Exon Skipping
Gene
ENSRNOG00000020151 | Cdh1
Description
cadherin 1 [Source:RGD Symbol;Acc:69279]
Coordinates
chr19:38817335-38821897:+
Coord C1 exon
chr19:38817335-38817558
Coord A exon
chr19:38821490-38821633
Coord C2 exon
chr19:38821742-38821897
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTGTTAATCTTTCCACCTAGGAC
3' ss Score
9.75
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
TGAAATTTGAAGGATGCACCGGCCGTCCAAGGACAGCCTTCTTTTCTGAAGACTCCCGATTCAAAGTGTCTACAGATGGCGTCATCACAGTCAAACGGCATCTAAAGCTTCACAAGCTGGAGACCAGTTTTCTCGTCCATGCCTGGGACTCCAGTTACAGGAAGCTTTCTACCAAAGTGACACTGAAGTCCCTGGGCCACCACCACCACCGGCATCACCACAGA
Seq A exon
GACCCTGTCTCTGAATCCAACCCAGAGCTGCTCACGTTTCCCAGCTTTCACCAGGGTCTGAGAAGACAGAAACGAGACTGGGTCATCCCTCCCATCAACTGCCCGGAAAATCAAAAGGGCGAATTCCCCCAGCGACTGGTTCAG
Seq C2 exon
ATCAAATCCAACAGGGACAAAGAGACAACGGTTTTCTACAGCATCACCGGCCCAGGAGCTGACAAACCCCCTGTTGGCGTTTTCATCATTGAGAGGGAGACAGGCTGGCTGAAAGTGACGCAGCCTCTGGACAGAGAAGCCATTGACAAGTACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020151-'9-4,'9-3,10-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.292 C2=0.115
Domain overlap (PFAM):
C1:
PF087586=Cadherin_pro=PD(67.8=81.3)
A:
PF0002812=Cadherin=PU(18.9=37.5)
C2:
PF0002812=Cadherin=FE(53.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCATCACAGTCAAACGGCA
R:
CCAGCCTGTCTCCCTCTCAAT
Band lengths:
253-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]