MmuEX6038209 @ mm10
Exon Skipping
Gene
ENSMUSG00000000303 | Cdh1
Description
cadherin 1 [Source:MGI Symbol;Acc:MGI:88354]
Coordinates
chr8:106649001-106653919:+
Coord C1 exon
chr8:106649001-106649224
Coord A exon
chr8:106653507-106653650
Coord C2 exon
chr8:106653764-106653919
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTAATCTTCTTTTCTCTTAGGAC
3' ss Score
10.84
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TGAGATTTGAAGGATGCACTGGCCGGCCAAGGACAGCCTTCTTTTCGGAAGACTCCCGATTCAAAGTGGCGACAGACGGCACCATCACAGTGAAGCGGCATCTAAAGCTCCACAAGCTGGAGACCAGTTTCCTCGTCCGCGCCCGGGACTCCAGTCATAGGGAGCTGTCTACCAAAGTGACGCTGAAGTCCATGGGGCACCACCATCACCGGCACCACCACCGC
Seq A exon
GACCCTGCCTCTGAATCCAACCCAGAGCTGCTCATGTTTCCCAGCGTGTACCCAGGTCTCAGAAGACAGAAACGAGACTGGGTCATCCCTCCCATCAGCTGCCCCGAAAATGAAAAGGGCGAATTTCCAAAGAACCTGGTTCAG
Seq C2 exon
ATCAAATCCAACAGGGACAAAGAAACAAAGGTTTTCTACAGCATCACCGGCCAAGGAGCTGACAAACCCCCCGTTGGCGTTTTCATCATTGAGAGGGAGACAGGCTGGCTGAAAGTGACACAGCCTCTGGATAGAGAAGCCATTGCCAAGTACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000303-'9-17,'9-6,17-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.354 C2=0.115
Domain overlap (PFAM):
C1:
PF087586=Cadherin_pro=PD(67.8=81.3)
A:
PF0002812=Cadherin=PU(18.9=37.5)
C2:
PF0002812=Cadherin=FE(53.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGGCATCTAAAGCTCCAC
R:
CACTTTCAGCCAGCCTGTCTC
Band lengths:
249-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types