BtaEX6081146 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015991 | E-CADHERIN
Description
Bos taurus cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002763]
Coordinates
chr18:36221702-36227109:+
Coord C1 exon
chr18:36221702-36221926
Coord A exon
chr18:36226684-36226827
Coord C2 exon
chr18:36226954-36227109
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCAACTTCTTTCCTTTCAGGAC
3' ss Score
11.49
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAGTTTTGAAGGATGTGCTGGCCTACCAAGGACAGTCTATGTTTCTGATGACACCCGATTCAAAGTGCACACAGATGGCGTGCTTACAGTCAGACGACCTGTACACCTTCATCGTCCAGAGCTAAGTTTTCTTGTCCATGCCTGGGACTCCACCCACAGGAAGCTCTCCACCAAAGTGACACTGGAGGTATCAGCGCACCACCACCACCACCACAGTCATCAT
Seq A exon
GACTCTCCCTCTGGAACCCAGACGGAAGTGCTCACATTTCCTGGTCCCCACCATGGTCTCAGGAGACAGAAGAGAGACTGGGTTATTCCTCCTATCAGCTGCCCAGAAAATGAGAAAGGCCCGTTTCCTAAGTCGCTGGTCCAG
Seq C2 exon
ATCAAATCTAACAAGGAGAAAGAAACCCAAGTTTTCTACAGCATCACTGGCCAAGGAGCTGATACACCCCCTGTCGGTGTTTTTATTATTGAAAGAGAAACAGGATGGTTAAAAGTGACACAGCCTCTGGATAGAGAACAGATTGCCAAGTACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015991-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.604 C2=0.135
Domain overlap (PFAM):
C1:
PF087586=Cadherin_pro=WD(100=84.0)
A:
PF0002812=Cadherin=PU(18.9=37.5)
C2:
PF0002812=Cadherin=FE(53.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACCCGATTCAAAGTGCA
R:
GTGTATCAGCTCCTTGGCCAG
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]