GgaEX1014128 @ galGal4
Exon Skipping
Gene
ENSGALG00000000608 | CDH1
Description
cadherin-1 precursor [Source:RefSeq peptide;Acc:NP_001034347]
Coordinates
chr11:18321503-18322240:+
Coord C1 exon
chr11:18321503-18321732
Coord A exon
chr11:18321843-18321977
Coord C2 exon
chr11:18322085-18322240
Length
135 bp
Sequences
Splice sites
3' ss Seq
ACGAGCCGCTGTTCCTGCAGGAC
3' ss Score
8.44
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
TGAGCTTTGCAGCCTGCAGCGGGCGGCCGTGGGCCGTGTATGTCCCGACTGACACACGCTTCAAGGTGAACGGGGATGGCGTCGTCTCAACAAAACGGCCACTGACGCTCTATGGGAGGAAGATCAGCTTCACCATCTACGCACAGGATGCCATGGGCAAGAGGCACTCAGCCCGGGTGACTGTGGGCAGGCACAGGCACCGCCGCCACCACCACAACCACCACCTGCAG
Seq A exon
GACACGACGCCGGCTGTGCTGACCTTCCCCAAGCACGACCCCGGCTTCCTCCGGAGGCAGAAGAGGGATTGGGTCATCCCCCCCATCAGCTGCCTCGAGAACCACCGGGGGCCCTACCCCATGAGGCTGGTGCAG
Seq C2 exon
ATCAAATCCAACAAGGACAAGGAGTCCAAGGTGTACTACAGCATCACGGGGCAGGGCGCGGACAGCCCGCCCGTGGGCATCTTCATCATCGAGCGCGAGACGGGGTGGCTGGAGGTGACGGAGCAGCTGGACCGGGAGAAGATCGATCGCTACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000608-'7-5,'7-4,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.200 C2=0.115
Domain overlap (PFAM):
C1:
PF087586=Cadherin_pro=PD(67.8=79.2)
A:
PF0002812=Cadherin=PU(18.9=40.0)
C2:
PF0002812=Cadherin=FE(53.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGCGTCGTCTCAACAAA
R:
TCGCGCTCGATGATGAAGATG
Band lengths:
255-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]