HsaALTD1006350-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr19:19641976-19642619:-
Coord C1 exon
chr19:19642537-19642619
Coord A exon
chr19:19642535-19642536
Coord C2 exon
chr19:19641976-19642051
Length
2 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
GACACACCTTTATCCCCCAGGAC
3' ss Score
9.33
Exon sequences
Seq C1 exon
GACTCCCCCCAGGTCCTGAGGGCAGGAAGAGGTACAGTGACATCTTCCGGAGCCTGGACAACCTCGAAATCTCACTGGGGAAC
Seq A exon
GT
Seq C2 exon
GACCCTTGAGATGCTGGCTGGAGACCCTCTACTCTCAGAAGACCCAGAACCTGACAAGACCCCTACAGCCACTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639-3-3,4-3,5-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.817
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCAGGAAGAGGTACAGT
R:
GAGTAGAGGGTCTCCAGCCAG
Band lengths:
100-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains