MmuALTD1022911-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:69809774-69810717:+
Coord C1 exon
chr8:69809774-69809856
Coord A exon
chr8:69809857-69809858
Coord C2 exon
chr8:69810630-69810717
Length
2 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
AGTATCTTTCCCACCCTCAGAAC
3' ss Score
7.78
Exon sequences
Seq C1 exon
AGCTAACCCCAGCTCCTGAGGGCAGGAAGAGATACAGTGACATCTTCCAGAGCCTGGACAACCTCGAGATATCATTGGGGAAC
Seq A exon
GT
Seq C2 exon
AACTTTTGATCCCCTGGCTGGAGACCCTGTACGCAGAGAAGACCTGGAGCCTGACAAAGCTGACACAGCCACAGTGGTGACTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-2-3,3-3,4-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=NA C2=0.733
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTGGACAACCTCGAGAT
R:
CTGTGTCAGCTTTGTCAGGCT
Band lengths:
102-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types