HsaALTD1006622-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000091428 | RAPGEF4
Description
Rap guanine nucleotide exchange factor 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr2:172928205-172960813:+
Coord C1 exon
chr2:172928205-172928224
Coord A exon
chr2:172928225-172928346
Coord C2 exon
chr2:172960760-172960813
Length
122 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TTTAACATTTTATTTTTCAGACA
3' ss Score
9.92
Exon sequences
Seq C1 exon
AAATGTTTGTTTTTGTACTT
Seq A exon
GTGAGTTATGCATTTTATGGGGCAGACTGTCGTTGCTGAATTTCTTTCTGCTTTTTATTCCATCTGTTCCTCAACTCTTACAAAAGCTAGCCATACCATCTCTCTCTCTAGCTTCTGAAGTG
Seq C2 exon
ACACCTCTCATTGAACCTCACGTTCCTCTTCGTCCTGCTAACACCATTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091428-18-20,19-20-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.540
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains