HsaEX0052276 @ hg38
Exon Skipping
Gene
ENSG00000091428 | RAPGEF4
Description
Rap guanine nucleotide exchange factor 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr2:172922281-172961228:+
Coord C1 exon
chr2:172922281-172922300
Coord A exon
chr2:172960760-172960813
Coord C2 exon
chr2:172961122-172961228
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTAACATTTTATTTTTCAGACA
3' ss Score
9.92
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGATTCCTGACAAGGAGAAC
Seq A exon
ACACCTCTCATTGAACCTCACGTTCCTCTTCGTCCTGCTAACACCATTACCAAG
Seq C2 exon
GTCCCTTCAGAGAAGATCCTCAGAGCTGGAAAAATTTTACGAAATGCCATTCTCTCTCGAGCACCTCACATGATAAGAGATAGAAAATACCACCTAAAGACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091428-'17-21,'17-20,24-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.540 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(19.7=38.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development