GgaEX0013752 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18818432-18846715:-
Coord C1 exon
chr7:18846651-18846715
Coord A exon
chr7:18818802-18818855
Coord C2 exon
chr7:18818432-18818538
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACTTTTATTTTATTTTTCAGACA
3' ss Score
10.49
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAATGCCAGATAAGGACAGTATGTCAAGCGGTGCTCTTTGCCAAGTTTCTAAAAATTGTAATAAG
Seq A exon
ACACCTCTTATTGACTCTCACATCCCACATCGTCCCTCTAAAACCATTACACAG
Seq C2 exon
GTTCCTTCAGAAAAGATCCTCAGAGCTGGAAAGATTTTGCGGAATACAATTCTGTCCCGAGCCCCTCACATGATAAGAGATCGTAAATATCATCTGAAGACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.734 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(19.7=38.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTATGTCAAGCGGTGCTC
R:
CGATCTCTTATCATGTGAGGGGC
Band lengths:
133-187
Functional annotations
There are 1 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]