GgaEX6042283 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18816480-18818855:-
Coord C1 exon
chr7:18818802-18818855
Coord A exon
chr7:18818432-18818538
Coord C2 exon
chr7:18816480-18816601
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCATGATCACCAAGGTT
3' ss Score
4.54
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACACCTCTTATTGACTCTCACATCCCACATCGTCCCTCTAAAACCATTACACAG
Seq A exon
GTTCCTTCAGAAAAGATCCTCAGAGCTGGAAAGATTTTGCGGAATACAATTCTGTCCCGAGCCCCTCACATGATAAGAGATCGTAAATATCATCTGAAGACTTACAG
Seq C2 exon
GCAGTGCTGTGTGGGAACAGAACTTGTTGACTGGATGATGCAGCAAAGTACTTGTGTCCATTCACGAAGTCAGGCTGTTGGCATGTGGCAAGTATTGCTGGAAGAAGGTGTTCTTAACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'14-15,'14-14,15-15=AN
Average complexity
A_C2
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.734 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061016=DEP=PU(19.7=38.9)
C2:
PF0061016=DEP=FE(57.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTTATTGACTCTCACATCCCA
R:
GGTTAAGAACACCTTCTTCCAGCA
Band lengths:
171-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]