RnoEX6017419 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58839909-58843358:+
Coord C1 exon
chr3:58839909-58839962
Coord A exon
chr3:58840277-58840383
Coord C2 exon
chr3:58843237-58843358
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCCACCTGATTAACACACAGGTC
3' ss Score
5.7
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ACACCTCTCATTGAACCTCACGTTCCTCTCCGCCCTGCTCACACCATTACCAAG
Seq A exon
GTCCCTTCAGAGAAGATCCTCAGAGCTGGAAAAATTTTGCGAATTGCCATTCTCTCTCGAGCACCCCACATGATAAGAGACAGAAAATACCACCTAAAGACATACAG
Seq C2 exon
ACAATGCTGTGTTGGGACTGAGCTGGTAGACTGGATGATACAGCAGACGTCCTGTGTTCACTCCCGGACTCAAGCTGTTGGCATGTGGCAAGTCTTGCTGGAAGATGGCGTCCTCAACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516-'27-17,'27-15,29-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061016=DEP=PU(20.0=38.9)
C2:
PF0061016=DEP=FE(58.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCTCATTGAACCTCACGT
R:
GTTGAGGACGCCATCTTCCAG
Band lengths:
171-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]