RnoEX0074038 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58806394-58840383:+
Coord C1 exon
chr3:58806394-58806413
Coord A exon
chr3:58839909-58839962
Coord C2 exon
chr3:58840277-58840383
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTAACATTTTATTTTTCAGACA
3' ss Score
9.92
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGATTCCGGACAAGGAGAAT
Seq A exon
ACACCTCTCATTGAACCTCACGTTCCTCTCCGCCCTGCTCACACCATTACCAAG
Seq C2 exon
GTCCCTTCAGAGAAGATCCTCAGAGCTGGAAAAATTTTGCGAATTGCCATTCTCTCTCGAGCACCCCACATGATAAGAGACAGAAAATACCACCTAAAGACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516-'16-15,'16-14,27-15
Average complexity
S
Mappability confidence:
94%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.444 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(20.0=38.9)
Main Skipping Isoform:
ENSRNOT00000010630fB12154
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]