DreEX0060860 @ danRer10
Exon Skipping
Gene
ENSDARG00000079872 | rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
Coordinates
chr9:2977464-2983874:-
Coord C1 exon
chr9:2983810-2983874
Coord A exon
chr9:2977898-2977948
Coord C2 exon
chr9:2977464-2977570
Length
51 bp
Sequences
Splice sites
3' ss Seq
CATCTACTTTTGTTTTCCAGAAA
3' ss Score
9.73
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAATGCCTGACAAAGAGAATCTGAGCAACAGTTCTCCTGGACTATCACCCAAGCACTTAAATAAG
Seq A exon
AAATCATTCATTGAAAATCCCATCAAAGTTCATCCCAAACCCATTAATCAG
Seq C2 exon
GTGCCGTCAGAGAAGATACTTCGGGCAGGAAAAGTGCTACGAAACATCATTTTATCTCGAGCGCCTCATATGATAAGAGACAGGAAATACCACCTGAAGACGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079872_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(19.7=38.9)
Main Inclusion Isoform:
ENSDART00000115138fB5127
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGACTATCACCCAAGCA
R:
ACGTCTTCAGGTGGTATTTCCT
Band lengths:
134-185
Functional annotations
There are 1 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]