GgaEX7001886 @ galGal4
Exon Skipping
Gene
ENSGALG00000010910 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr2:30877818-30902239:-
Coord C1 exon
chr2:30902156-30902239
Coord A exon
chr2:30878787-30878837
Coord C2 exon
chr2:30877818-30877924
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCTACCAAACTGTCTTACAGACA
3' ss Score
6.76
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTTTCTCTGGGAGAACTAGGTTTAAACCTGGCCACTAAAAGGTGGAATATTTACCTCTGCAGAGTTATTGCACCTGGCAGCCCA
Seq A exon
ACACTGTCCAGAAGAATTTCAAATCCATACCTGGAAACTCCTTCAAACAAG
Seq C2 exon
ATTTATGGAGAAAGTTCCTCCTGTGCTGGGAGAGCTCTCAGGAATATTTTTACACTACAAGCTTCTGATCTGATTAAAGACAGGGTGTACCTTACTGGAATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910-'2-5,'2-4,6-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(17.4=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGTTATTGCACCTGGC
R:
TGCAAATTCCAGTAAGGTACACCC
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]