HsaEX6007435 @ hg38
Exon Skipping
Gene
ENSG00000136237 | RAPGEF5
Description
Rap guanine nucleotide exchange factor 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr7:22315370-22356914:-
Coord C1 exon
chr7:22356830-22356914
Coord A exon
chr7:22317987-22318037
Coord C2 exon
chr7:22315370-22315476
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTGTTTAAAATAGACT
3' ss Score
7.66
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCTGCGGCCGCGGCTGAGGGACCTGCCCGCGCTGCTGCGGAGCGGGCTCACGCTGCGGAGGAAGCGGAGCGCCGCTGGGGGCCGG
Seq A exon
ACTCTATCAAGAAGAATATCTAATCCGTACCTTGAACATACGCCTTCCCAG
Seq C2 exon
ATTTATGGAGAGAATTCTTCTTGTGCAGGAAGAGCATTGAGGAATATTATTATCGTTCAAGCAGCTGACCTGATAAAGGACAGAGTGAACCTCAAGGGGTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136237-'0-5,'0-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=0.212 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(17.4=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGCTGCGGAGGAAG
R:
ACCCCTTGAGGTTCACTCTGT
Band lengths:
139-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains