MmuEX6083388 @ mm9
Exon Skipping
Gene
ENSMUSG00000041992 | Rapgef5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:MGI Symbol;Acc:MGI:2444365]
Coordinates
chr12:118765609-118816200:+
Coord C1 exon
chr12:118765609-118765722
Coord A exon
chr12:118814028-118814078
Coord C2 exon
chr12:118816094-118816200
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTTTTAAAATAGACT
3' ss Score
7.12
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTCCAGTCATTTCTCCATACTGTTGCTAGCTGGGAGCAAGACTTCAAAGCCACTTTTGATGGGAACACTTCCTATGCAAACCACGAGGGCAGATGACCACTGGTGACTGCCAG
Seq A exon
ACTCTCTCAAGAAGAATTTCTAATCCATACCTTGAACATAGTCCTTCTCAG
Seq C2 exon
ATTTATGGAGAGAATTCTTCCTGTGCAGGAAGAGCATTAAGGAATATTATTATCCTTCAAGCAGCTGACCTGGTAAAGGACAGAGTGAATCTCAAGGGGTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041992-'2-4,'2-3,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(18.6=36.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCACGAGGGCAGATGAC
R:
CCCCTTGAGATTCACTCTGTCC
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: