MmuEX6083388 @ mm10
Exon Skipping
Gene
ENSMUSG00000041992 | Rapgef5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:MGI Symbol;Acc:MGI:2444365]
Coordinates
chr12:117527136-117577727:+
Coord C1 exon
chr12:117527136-117527249
Coord A exon
chr12:117575555-117575605
Coord C2 exon
chr12:117577621-117577727
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTTTTAAAATAGACT
3' ss Score
7.12
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTCCAGTCATTTCTCCATACTGTTGCTAGCTGGGAGCAAGACTTCAAAGCCACTTTTGATGGGAACACTTCCTATGCAAACCACGAGGGCAGATGACCACTGGTGACTGCCAG
Seq A exon
ACTCTCTCAAGAAGAATTTCTAATCCATACCTTGAACATAGTCCTTCTCAG
Seq C2 exon
ATTTATGGAGAGAATTCTTCCTGTGCAGGAAGAGCATTAAGGAATATTATTATCCTTCAAGCAGCTGACCTGGTAAAGGACAGAGTGAATCTCAAGGGGTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041992-'3-11,'3-7,6-11=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(18.6=36.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCACGAGGGCAGATGAC
R:
CCCCTTGAGATTCACTCTGTCC
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types