HsaEX6007435 @ hg19
Exon Skipping
Gene
ENSG00000136237 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:16862]
Coordinates
chr7:22354989-22396533:-
Coord C1 exon
chr7:22396449-22396533
Coord A exon
chr7:22357606-22357656
Coord C2 exon
chr7:22354989-22355095
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTGTTTAAAATAGACT
3' ss Score
7.66
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCTGCGGCCGCGGCTGAGGGACCTGCCCGCGCTGCTGCGGAGCGGGCTCACGCTGCGGAGGAAGCGGAGCGCCGCTGGGGGCCGG
Seq A exon
ACTCTATCAAGAAGAATATCTAATCCGTACCTTGAACATACGCCTTCCCAG
Seq C2 exon
ATTTATGGAGAGAATTCTTCTTGTGCAGGAAGAGCATTGAGGAATATTATTATCGTTCAAGCAGCTGACCTGATAAAGGACAGAGTGAACCTCAAGGGGTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136237-'0-3,'0-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=0.324 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(17.4=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGCTGCGGAGGAAG
R:
ACCCCTTGAGGTTCACTCTGT
Band lengths:
139-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)