DreEX6081741 @ danRer10
Exon Skipping
Gene
ENSDARG00000079291 | rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:ZFIN;Acc:ZDB-GENE-090312-38]
Coordinates
chr23:33457373-33487379:+
Coord C1 exon
chr23:33457373-33457625
Coord A exon
chr23:33470000-33470044
Coord C2 exon
chr23:33487273-33487379
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTATTTGTCCTCCTCACAGACG
3' ss Score
9.41
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGCCTGAAGATCAGACGCACGTAGGAATGCAGCGTGCACGTCGGACTGTCTTTAAGCAAATGCTGTCAAATTCTTATTGGATATGTAGTTTCCGCCATGTGTTGCTGCAACAGATGAACTCGGAGTAAAATATAAATGTTTTTATTGCATCGGACCTGAGTGAAACATGCATCTCTTTCGGAGTTACAATTACAAAGTCTTTCCCGATCGTTGTTCCAATGAGAAAACTCCTCAGATTCGGGGAATCAGCTGG
Seq A exon
ACGCCTCTGCCAGACGCTGTGGATACACAAGACACCATCAAACAG
Seq C2 exon
TTTTTATCAGATCGAATCCTGAAGGCTGCACGGGTAGTTTACAGCACTCTGATGGAGGGTAACCCAGGCCTGATAAGAGACAGAAAACACCATCTTAAGACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079291-'2-3,'2-1,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(17.1=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACCTGAGTGAAACATGCA
R:
GTGCAGCCTTCAGGATTCGAT
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]