MmuEX0038789 @ mm10
Exon Skipping
Gene
ENSMUSG00000022469 | Rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:2441741]
Coordinates
chr15:97761475-97766974:-
Coord C1 exon
chr15:97766762-97766974
Coord A exon
chr15:97761679-97761732
Coord C2 exon
chr15:97761475-97761581
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACTCTTCGTACTGTCCTCAGACA
3' ss Score
8.06
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTCAGCTGGCCAGGTGAGAACCACTGGCAGGTGGGCCCAGCTGTGGTGGAGAGTCCAGCTGTGGGGGCACCGCAGGTGGGAGGTCTCCCGGACGTGGTTCCGGAGGGCACGCTGCTCAATATGGTGTTGAAGAGAATGCACCGTCCCCGCTGCTGCTCTTACCAGCTAGTGTTCGAGCACCGGCGCCCCAGCTGCATCCAGGGACTCCGCTGG
Seq A exon
ACACCACTTACCAACAGCGAGGACTCCCTGGATTTCAGAGTGAGTCTGGAGCAG
Seq C2 exon
GCCACCACAGAGCATGTGCACAAGGCAGGGAAGCTCCTGCACCGCCATCTCTTGGCCACGTACCCTACCCTCATCCGAGACAGAAAATACCATCTGCGACTATATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022469-'7-16,'7-15,10-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(18.3=36.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTAGTGTTCGAGCACCG
R:
CTGTCTCGGATGAGGGTAGGG
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types